Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_5623
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Entry
SHJG_5623 CDS
T02063
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shy03016
]
SHJG_5623
Enzymes [BR:
shy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SHJG_5623
Transfer RNA biogenesis [BR:
shy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SHJG_5623
Prokaryotic type
tRNA splicing ligases
SHJG_5623
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEY90890
LinkDB
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Position
6427081..6428274
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPATVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQVIPVGRGMHQDPVEPG
DFHGLATAGWEDFWGRFEGVAEAVKFRHDRAEKQMGTLGSGNHYLEVCLDQSDSVWLTLH
SGSRNIGKELAEHHIGVAQKLPHNQDLVDRDLAVFVSDTPQMAAYRHDLFWAQEYAKYNR
TLMMALLKDVIRKEFKKAKPTFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEFGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTTKDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMEQQRDLVEVVAKLKQFICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgccaaggtcccgatccggatgtggacggacccggcg
acggtcgaggacgtggccctgcgccagctccagaacgtggcgaccctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggcgccacggtcggctcggtcatc
gcgatgcggggcgcggtgtgcccggcggcggtcggggtggacatcggctgcgggatgtcg
gcggtgcggacgtccctgacggcgaacgacctccccggtgacctgtcgcgactgcgatcg
aggatcgagcaggtgattccggtgggccgggggatgcaccaggatcccgtggagccgggg
gacttccacgggctggccaccgcggggtgggaggacttctgggggcggttcgagggggtg
gcggaggcggtcaaatttcgtcacgatcgagcagaaaagcagatgggaacgctcggatcc
ggaaaccactacctcgaagtttgtcttgatcagtcagattcggtctggctcacgctccac
tcagggtcgcgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagaag
cttccgcacaaccaggacctggtcgaccgcgacctcgccgtcttcgtgtcggacaccccg
cagatggccgcctaccgccatgacctgttttgggcgcaggagtacgccaagtacaaccgc
acgctcatgatggcgctcctgaaggatgtgatccgcaaggagttcaagaaggcgaagccg
accttcgagccggagatctcgtgccaccacaactacgtggcggaggagcggtacgaggga
atggacctgctcgtgacccgtaagggagcgatccgcgccggatccggtgagttcgggatc
attcccggttcgatgggcaccagctcgtacatcgtgaagggcctcgggaacgagaaggcc
ttcaactcggcttcgcacggggccggtcgacgtatgagccgtaacgcggccaagcgccgc
ttcacgacgaaggacttggaggagcagacccggggtgtggagtgccgcaaggactcgggg
gtgctggacgagattccgggtgcttacaagaacatcgaccaggtgatggagcagcagcgc
gacctcgttgaggtcgtggcgaagctgaagcagttcatctgcgtgaagggttga
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