Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6914
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Entry
SHJG_6914 CDS
T02063
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHJG_6914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shy03019
]
SHJG_6914
03400 DNA repair and recombination proteins [BR:
shy03400
]
SHJG_6914
Enzymes [BR:
shy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHJG_6914
Messenger RNA biogenesis [BR:
shy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHJG_6914
DNA repair and recombination proteins [BR:
shy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SHJG_6914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AEY92181
LinkDB
All DBs
Position
complement(7872553..7874727)
Genome browser
AA seq
724 aa
AA seq
DB search
MGRMEHTSNADLRAQADAVLARLVGDATGAARLREDQWRAIEALVADRRRALVVQRTGWG
KSAVYFVATSLLRARGSGPTVIVSPLLALMRNQVDAAGRAGIHARTINSANTEEWETVQA
EIAAGDVDVLLVSPERLNNPDFRDQVLPKLSAATGLLVVDEAHCISDWGHDFRPDYRRLR
TMLADLPPGVPVLATTATANARVTADVAEQLGTGGTSDALVLRGPLDRESLSLGVLRLPD
AAHRMAWLADHLDDLPGSGIVYTLTVAAAEEVTAFLRQRGHAVAPYTGKTENAERQQAED
DLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDHAEVLLLP
GREDEAIWQYFASLAFPSEDLVRRTLDVLARADGPLSLPALEPLVELRRSRLETMLKVLD
VDGAVRRVKGGWIATGQPWSYDADRYAWVARQRAAEQQAMREYATTTECRMEFLQRQLDD
EGAKPCGRCDNCAGPRFTSGLSPAALDAARSDLGRAGVEVEPRRMWPTGLPAIGIDLKGR
IPAGDQASPGRALGRLSDIGWGNRLRPLLAPQTPDAAVPDDVARAVVDVLADWARGPGGW
ASGAPDAPPRPVGVVTVASRSRPRLIHSLGTRIAEVGRLPLLGSVEYARDAPRSPRSNSA
QRLKALDGALTVPPDLASALAAGNGPVLLVDDFTETGWTLAVAARLLRKSGARGVLPLVL
AVQG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcatggagcacacgagcaacgcggatctccgggcgcaggcggacgccgtcctc
gcccggctcgtcggggatgccacgggcgcggcccggctgcgcgaggaccagtggcgggcg
atcgaggcattggtcgcggaccggcgccgggccctggtcgtacagcgcacgggatggggc
aagtccgcggtgtacttcgtggcgacctcgctgctgcgggccagaggaagcgggcccacg
gtgatcgtctcgccgctgctcgcgctcatgcggaaccaggtggatgccgccggccgggcc
ggtatccacgcccggaccatcaactccgccaacaccgaggagtgggagaccgtccaggcc
gagatcgcggcgggcgacgtcgacgtgttgctcgtctcgccggagcggctgaacaacccg
gacttccgtgaccaggtcttgcccaagctgtccgcggccaccggtctgctcgtcgtggac
gaggcccactgcatctccgactggggccacgacttccgccccgactaccgccggctgcgc
accatgctcgccgacctcccacccggggtccccgtactggccaccaccgccacggccaac
gcgcgagtgaccgcggacgtcgccgagcagctcggcacggggggcacgtccgacgccctg
gtcctgcgcgggccgctggaccgggagagtctcagcctcggcgtgctgcggctcccggac
gccgcgcaccggatggcctggctcgccgaccatctggacgacctgccgggctccggcatc
gtctacacgctcaccgtggccgccgccgaggaggtcaccgccttcctgcggcagcgcggg
cacgccgtcgccccgtacacgggcaagacggagaacgccgaacggcagcaggccgaggac
gacctcctcgccaaccgcgtcaaggccctggtcgccacctccgcgctcggcatgggcttc
gacaagccggatctcggtttcgtggtccatctgggctcgccctcctcccccatcgcctac
taccagcaggtcggcagggccggccgtggtgtcgaccacgcggaggtactgctgctgccg
ggccgggaggacgaggcgatctggcagtacttcgcgtcgctggccttcccctccgaggat
ctggtccggcgcaccctggacgtcctggcccgggcggacggccccctctcgctgcccgcc
ctggaaccgctggtcgagctgcggcgctcacgcctggagaccatgctgaaggtcctcgac
gtggacggggcggtgcgtcgcgtcaagggcggctggatcgcgaccggacagccgtggtcc
tacgacgccgaccgctacgcgtgggtggcccggcagcgcgcggccgaacagcaggcgatg
cgcgagtacgcgaccaccaccgagtgccggatggagttcctccagcgccaactggacgac
gaaggcgccaaaccctgtggccgctgcgacaactgcgccggaccgcgcttcacctccggt
ctgtccccggcggccctcgacgccgcgcggagcgacctgggccgcgccggagtggaagtg
gagccccgccgcatgtggccgaccggcctgccggccatcggcatcgacctcaagggacgc
atcccggccggggaccaggcctcgcccgggcgggcgctgggacgcctgtccgacatcggc
tggggcaaccgcctgcgtccgctgctcgcgccccagacgccggacgccgcagtccccgac
gacgtggcgcgagctgtggtggacgtcttggccgactgggccagaggtcccggcggctgg
gcctccggtgcgcccgacgccccgccccggcccgtgggcgtcgtcaccgtggcctcgcgc
agccggccccggctgatccactccctgggcacccggatcgccgaagtcggcagactgccc
ctgctcggctcggtggagtacgccagggacgctcctcgctcgccacgcagcaacagcgcg
cagcggctgaaggccctcgacggcgcgttgacggtgccgcccgacctggcgtcggcactc
gccgcggggaacggtccggtgctgctggtcgacgacttcacggagacgggctggacgctc
gcggtcgcggcacgcctgctgcggaagtccggggcgcgcggagtgctgccgctggtcctc
gcggtgcaggggtga
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