Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6920
Help
Entry
SHJG_6920 CDS
T02063
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SHJG_6920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shy03021
]
SHJG_6920
Transcription machinery [BR:
shy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHJG_6920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
Sigma70_r1_1
CDC27
Motif
Other DBs
NCBI-ProteinID:
AEY92187
LinkDB
All DBs
Position
7884531..7886072
Genome browser
AA seq
513 aa
AA seq
DB search
MSASTSRTLPPEIAESVSVMALIERGKAEGQIAGDDVRRAFEADQIPATQWKNVLRSLNQ
ILEEEGVTLMVSAAEPKRTRKSVAAKSPAKRTATKTVAAKTVTTRKATATTAAPAAPAAP
AAADSAEEAAPAKKAVAKKVTAKKTVAKKAVAKKTAAKKTTAKKDDVELLEDEVLEDTKV
ADEPEGAESAGFVLSDEDEDDAPAQQVAAAGATADPVKDYLKQIGKVPLLNAEQEVELAK
RIEAGLFAEDKLANADKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGM
LFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV
INKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEF
GDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKV
YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccagcacatcccgtacgctcccgccggagatcgccgagtccgtctctgtcatg
gcgctcattgagcggggaaaggctgaggggcagatcgccggcgacgatgtgcgtcgggcc
ttcgaagctgaccagattccggccactcagtggaagaacgtactgcgcagcctcaaccag
atccttgaggaagagggtgtgacgctgatggtcagtgccgcagagcccaagcgcacccgc
aagagcgtcgcagcgaagagccccgccaagcgcaccgccaccaagacggtcgcggcgaag
acggtgaccacccgtaaggccaccgcgaccacggccgcccccgcggcgcccgccgctccg
gccgcagccgattccgccgaagaagccgcacccgccaagaaggccgtcgccaagaaggtg
accgccaagaagacggtcgccaagaaggcggtcgcgaagaagacggccgccaagaagacc
acggccaagaaggacgacgtcgagctccttgaggacgaggttcttgaggacaccaaggtc
gccgacgagcccgagggtgccgagagcgccggcttcgtcctgtccgacgaggacgaggac
gacgcgcccgcgcagcaggtcgccgcggccggtgccaccgcggacccggtcaaggactac
ctgaagcagatcggcaaggtccccctgctcaacgccgagcaggaggtcgagctggccaag
cggatcgaggcgggtctgttcgccgaggacaagctggccaacgccgacaagctcgccccg
aagctcaagcgcgagctggagatcatcgccgaggacggccgccgcgccaagaaccacctc
ctggaggccaacctccgactggtggtctccctggccaagcgctacaccggccgcggcatg
ctcttcctggacctcatccaggagggcaacctcggtctgatccgcgcggtcgagaagttc
gactacaccaagggctacaagttctccacgtacgccacctggtggatccgtcaggcgatc
acccgcgccatggccgaccaggcccgcaccatccgtatcccggtgcacatggtcgaggtc
atcaacaagctcgcgcgcgtgcagcgccagatgctccaggacctgggccgcgagcccacc
ccggaggagctggccaaggagctcgacatgaccccggagaaggtcatcgaggtccagaag
tacggccgtgagcccatctcgctgcacaccccgctcggcgaggacggcgacagcgagttc
ggtgacctcatcgaggactccgaggccgtcgtcccggccgacgcggtcagcttcacgctc
ctgcaggagcagctgcactccgtcctggacaccctgtccgagcgcgaggcgggcgtcgtg
tccatgcgcttcggtctcaccgacggtcagccgaagaccctcgacgagatcggcaaggtg
tacggcgtgacgcgcgagcgcatccgccagatcgagtccaagaccatgtcgaagctgcgc
cacccctcgcgctcgcaggtgctgcgcgactacctcgactag
DBGET
integrated database retrieval system
