Sphingobium xenophagum: CJD35_00225
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Entry
CJD35_00225 CDS
T05146
Name
(GenBank) dicarboxylate--CoA ligase PimA
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd00061
Fatty acid biosynthesis
shyd00071
Fatty acid degradation
shyd01100
Metabolic pathways
shyd01212
Fatty acid metabolism
shyd02024
Quorum sensing
shyd04146
Peroxisome
Module
shyd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
CJD35_00225
00071 Fatty acid degradation
CJD35_00225
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
CJD35_00225
09145 Cellular community - prokaryotes
02024 Quorum sensing
CJD35_00225
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shyd01004
]
CJD35_00225
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shyd04147
]
CJD35_00225
Enzymes [BR:
shyd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
CJD35_00225
Lipid biosynthesis proteins [BR:
shyd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
CJD35_00225
Exosome [BR:
shyd04147
]
Exosomal proteins
Exosomal proteins of breast milk
CJD35_00225
Exosomal proteins of breast cancer cells
CJD35_00225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
AMP-binding_C_2
DUF4314
Motif
Other DBs
NCBI-ProteinID:
ASY43055
UniProt:
A0A249MPE8
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All DBs
Position
I:complement(46963..48669)
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AA seq
568 aa
AA seq
DB search
MESIEKIWREHYQHPTVWERTFPPLSMGEMVTSSALAHPDAPMIDFMGRRFSYGTMFGQI
RRIACGLQAMGVQKGDRVGLYLPNTPHYVAAYYGALIAGAIVVNFSPLYTAAELEHQVED
SGTKILFTLSAKALLPTALEVLEHSSLEKLVVGSVAEMLPPVKSLLFRLFKASESVPLPD
DPRVLRYDRLIANAGDCTVPSIDPERDIALLQYTGGTTGTPKGAMLTHQNLTANARQAQA
IDPHANEEDRIIAVLPFFHVFANTCTLNRTVINGGEMVMLPRFDAAQVLAAVQRVKATSL
PGVPTMFQALLDHPAIRNIDFSSLRACISGGAPLPLEVRQRFEAATGAKLIEGYGLTETS
PIVCSNPYEGLNKTGTVGQPVPGTRVKLVDREDPTRPPPPGEPGELLFAGPQIMKGYWNR
PDADADVFIGDFIRTGDVGEIDEDGYVRIVDRLKDMIAVGGFKVFPSQVEAVLYHHPMVK
EALVIGIPDRYRGEQPKAFVTLAEDAEIDGAALKDWLNPQLGKHERVCEVEVRLNLPRTL
VGKLSRKELVAEERAKAAARAAEAGTAA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggagagcatagagaaaatctggcgggagcattatcagcaccccaccgtatgggaacga
acattcccccctttgtcgatgggtgagatggtcaccagcagcgcgctggcccaccccgat
gcaccgatgatcgacttcatgggtcgccggttcagctatggcacgatgttcgggcaaatc
cgccgcattgcatgcggtttgcaggcaatgggggtgcagaagggcgaccgggtcggcctg
tatctgcccaacacgccccattatgtcgcggcctattatggcgcgctgatcgctggcgcg
atcgtcgtcaatttctcccccctctacaccgctgccgaactggaacatcaggtcgaggat
agcgggacgaaaatcctgttcaccctgtcggccaaggcgctgcttcctaccgcgctggaa
gtgctggagcatagcagcctggagaagctggtcgtcggatcggtggcggagatgctgccc
ccggtcaaatccctgctcttccgcctgttcaaggcgagcgagtccgtgcccttgccggac
gatccgcgcgtgctgcgctatgacaggctgatcgccaatgcgggcgactgcacggtgccc
tcgatcgacccggagcgggacatcgccctgctgcaatatacaggcgggacgacaggcacg
cccaagggggcgatgctgacccatcagaatctgaccgccaatgcgcgacaggcgcaggcg
atcgacccgcacgcgaatgaggaagatcgcatcatcgcggtgctgcccttcttccatgtg
ttcgccaatacctgcacgctcaaccgcaccgtgatcaatggcggcgagatggtcatgctg
ccccgtttcgacgcagcgcaggtgctggcggcggtgcagcgggtcaaggcgacatcgctg
ccgggcgtgccgaccatgttccaggcgctgctggatcatccagcgatccgcaacatcgac
ttttcgtcgctgcgggcctgtatttcgggcggtgcgccgctgccgctggaagtgcggcaa
cggttcgaggcggcgacgggcgccaagctgatcgaaggttatggcctcaccgaaaccagc
ccgatcgtctgttccaatccctatgaggggctgaacaagaccgggacggtgggacagccg
gtgccggggacgcgggtgaagctggtggatcgcgaagaccccaccaggccgccgccgccg
ggcgaaccgggcgaattgctgttcgccgggccgcagatcatgaaaggctattggaaccgg
ccggatgccgacgccgatgtctttatcggcgatttcatccgcaccggcgatgtgggcgag
attgacgaggatggttatgtccgcatcgtcgaccgattgaaggacatgatcgccgttggc
ggcttcaaagtgtttccgagccaggtcgaggcggtcctctaccatcatccgatggtcaaa
gaagcgttggtcatcggcattcccgaccgttatcgcggcgaacagcccaaggcgttcgtg
acgctggccgaggatgcggagattgacggcgcggcgttgaaggactggctcaatccgcaa
ctgggcaagcatgaacgggtgtgcgaggtcgaggtgcggctgaacctgccccgcacgctg
gtcggcaagctatcgcgcaaggaactggtcgccgaggaacgcgcgaaagcggccgcgcgc
gctgcggaggctggaacagcggcctga
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