Sphingobium xenophagum: CJD35_02455
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Entry
CJD35_02455 CDS
T05146
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shyd
Sphingobium xenophagum
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyd03032
]
CJD35_02455
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_02455
Enzymes [BR:
shyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CJD35_02455
DNA replication proteins [BR:
shyd03032
]
Prokaryotic type
DNA Topoisomerases
CJD35_02455
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CJD35_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ASY43443
UniProt:
A0A249MQ03
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All DBs
Position
I:496220..497287
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AA seq
355 aa
AA seq
DB search
METGKRTTARHVAERSDERWVFGHEKENMASQPLIHVDDSIPGISRRALKNGWGYYQPDG
CRIADREEIDRLNAIALPPAYRDCWFCPMPHGHILATGHDERGRKQYRYHPEFRAGRDAQ
KYEGCAAFGRALPKLRAQMEADLSRRGLRKERTIAAVVRLLDLGRLRVGNEYYATTNKSF
GATTLRRRHVDLTGKALTLRYRAKSGKQHLVTLTDRRLVRFVRNVQDLPGQHLFQYLDED
GDARPITSSDVNAYIAQAMGGAFTAKHFRTWGASTIAFATLAAGPVSMKALLEPVAAALG
NTPAISRKSYVHPALLELCKDGQDEWRAGLRLPRRTRYLSREERGLIAFLDTLAG
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaggcaaacggaccacggcccgacacgttgcggaacgaagcgatgaaaggtgg
gtttttggccatgagaaggaaaatatggccagccaacccctcatccatgtggatgacagc
atccccggcatttcgcgacgcgctctcaaaaatggctggggctattatcagccagacgga
tgccgcattgccgatcgcgaagagattgatcggctgaatgccatcgcgctaccgcccgcc
tatcgcgactgctggttctgcccgatgccccatggccatatattggcgacggggcatgac
gagcggggccgcaagcaatatcgctatcacccggaattccgcgccgggcgggacgcacag
aaatatgaaggctgcgccgcgttcggtcgcgccctgccgaaattgcgggcgcaaatggag
gcggacctgtcgcggcgtggattgcgcaaggagcggaccatcgccgcggtcgtgcggtta
ctggatctcggccggttgcgcgtgggtaatgaatattatgccactactaacaagagtttc
ggcgcgacgacgctgcgccgccgtcatgtcgacctgaccggcaaggcgctgacgctgcgc
tatcgcgccaagtcgggcaagcagcatctggtgacgctgaccgacaggcggctggtgcgc
ttcgtgcggaatgtgcaggatttgcccggccagcatctcttccaatatctggatgaggat
ggcgatgcccgcccgatcacgtcgagcgatgtgaacgcctatattgcgcaggccatgggc
ggtgccttcaccgccaagcatttccgcacctggggggcatcgaccatcgcctttgccact
ttggccgctgggccggtgtcgatgaaggccctattggagccagtggccgccgcgctcggc
aacacgccggcgatcagccgcaaaagctatgtccaccctgcgctgctggaattgtgcaag
gatggacaggatgaatggcgcgccgggcttcgcctgccgcgccgtacacgctatttgtct
cgcgaagagcgcggactcatcgcatttctcgacacgcttgccggataa
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