Sphingobium xenophagum: CJD35_03170
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Entry
CJD35_03170 CDS
T05146
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
shyd
Sphingobium xenophagum
Pathway
shyd02020
Two-component system
shyd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CJD35_03170
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CJD35_03170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shyd03021
]
CJD35_03170
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shyd02035
]
CJD35_03170
Transcription machinery [BR:
shyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CJD35_03170
Bacterial motility proteins [BR:
shyd02035
]
Flagellar system
Flagellar assembly proteins
Stator
CJD35_03170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
ASY43566
UniProt:
A0A249MQD8
LinkDB
All DBs
Position
I:complement(642654..643382)
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AA seq
242 aa
AA seq
DB search
MYMNKITSGAHTYGRPGDNSPERLARQYMPLVRKIAWHVHGRVSTAIEVEDLLQIGMVAL
VEAANGFEDRGLGFAAYAQLRVRGAMIDHLRRQATICRSAMARRKDLAKVRNRLEQKLGR
LPTEAEMSADMGLEPAAYREIADSVEMVQHTSMDEVYSDQSMWFADVEDRADDILERESL
KAAIARGIGELPEREALVLQLYFVEELNLEEIGHTLDIGAARVCQIKKAALDRLREKLRD
WH
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgtacatgaacaagatcacgtccggcgcccacacttatggcagaccgggggacaacagc
ccggaacggctcgcgcgtcaatatatgccgctggtccgcaagatcgcctggcacgtccat
ggccgcgtttccaccgcgatagaggtggaggatctgctccagatcggcatggtcgcgctg
gtcgaggccgccaatggttttgaggatcgcgggctgggttttgccgcctatgcgcaactg
cgcgtgcgtggcgcgatgatcgaccatctgcggcggcaggcgacgatttgccggtcagcc
atggccaggcgcaaggatctggccaaggtgcgcaatcggcttgaacagaagctggggcgc
ctcccgaccgaagcggaaatgtccgctgacatggggctggaaccggccgcctatcgcgaa
atcgccgacagcgtggaaatggtccagcacacaagcatggacgaagtctattccgaccag
tcgatgtggttcgccgatgtggaggatcgcgccgatgacatattggaacgcgaatcgctc
aaggctgcgatcgcccgcggcatcggcgaattgccggagcgcgaggcgctggtgctgcaa
ctctattttgtcgaggaactcaatctggaggagatcggccacacgctcgacattggcgcg
gcgcgggtctgccagatcaagaaagccgcgctcgaccgcctgcgcgagaaactgcgcgac
tggcattga
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