Sphingobium xenophagum: CJD35_04920
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Entry
CJD35_04920 CDS
T05146
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd00061
Fatty acid biosynthesis
shyd00071
Fatty acid degradation
shyd01100
Metabolic pathways
shyd01212
Fatty acid metabolism
shyd02024
Quorum sensing
shyd04146
Peroxisome
Module
shyd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
CJD35_04920
00071 Fatty acid degradation
CJD35_04920
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
CJD35_04920
09145 Cellular community - prokaryotes
02024 Quorum sensing
CJD35_04920
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shyd01004
]
CJD35_04920
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shyd04147
]
CJD35_04920
Enzymes [BR:
shyd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
CJD35_04920
Lipid biosynthesis proteins [BR:
shyd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
CJD35_04920
Exosome [BR:
shyd04147
]
Exosomal proteins
Exosomal proteins of breast milk
CJD35_04920
Exosomal proteins of breast cancer cells
CJD35_04920
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Cap17-like_N
Motif
Other DBs
NCBI-ProteinID:
ASY43866
UniProt:
A0A249MR85
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All DBs
Position
I:1002133..1003875
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AA seq
580 aa
AA seq
DB search
MFFTRATERGDTPFLWRKSGGTWHPLSWNEVARRVAALSTALKSLGLKPGDPVMLVSENR
PEFCIADLAIMAAGCITVPTYTTNTTRDHQHILTDSGARAVIVSTAKLAQALMPAVVRSQ
ASFVIGMEPLRGAQGQATCHLWDDLIAAHPTDVAACAAAQTAIRQDQACIIYTSGTGGAP
RGVMQHHGAILLNAEGAGTIVAEDFGWGEETFLSFLPLSHAYEHSGGQFLPMLLGGQIYY
AEGLEKLASNIEETRPTIMVVVPRLFEVLRARIIKSIEKQGKFPTWLMAQALRIGAKEQQ
GKASVLDLPLKALLARTLLPKIRARFGGRLKALVSGGAPLNPDVGLFFDAMGLTLLQGYG
QTEAGPVVSCNRPSAGIAMDTVGPPLKGVEVKIADDGEILVRGELVMHGYWRNPVETEKV
LKDGWLHTGDIGEFDAKGRIRITDRKKDLIVNDKGDNVSPQKIEGMLTLQNEIGQAMVHG
DRRPYLVGLIVPDAEWTREWAQANGVVPADAHANPAYMAALRAAVDRVNADLSVIERVRR
FILADEPFTIDNEEMTPSMKIRRHVIRKRYADRMDALYKA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttcttcacgcgcgccacagagcgcggcgacaccccctttctgtggcgcaagagcggc
gggacatggcatccgctcagttggaatgaggtcgcccgccgggtcgccgctctgtccacc
gcgctcaaatccctgggcctcaagcccggcgacccggtcatgctggtcagcgagaatcgg
cccgaattctgcatcgccgacctggcgatcatggcggcaggctgcatcaccgtgccgacc
tacaccaccaacaccacgcgcgatcaccagcatatcctgaccgacagcggcgcccgcgcc
gtcatcgtctcaaccgccaagctggcacaggcgctgatgcccgccgtcgtccgctcgcag
gccagcttcgtcatcggtatggagccgttgcgcggcgcacaggggcaggcgacctgccat
ctgtgggacgatctgatcgccgcccaccccaccgacgtcgccgcctgcgccgccgcccag
accgcaatccgccaggatcaggcctgcatcatctataccagcggcaccggcggcgcgccg
cgcggtgtgatgcagcatcatggcgcgatcctgctcaatgccgaaggcgcaggcaccatc
gttgcggaggatttcggctggggcgaggagacattcctctccttcctccccctctcccat
gcctatgaacatagcggcgggcagttcctgcccatgctgctgggcgggcaaatctactat
gcggaagggttggaaaagctcgcgagcaatatcgaggaaacccggcccaccatcatggtc
gtcgtcccccgcctgttcgaagtgctacgcgcccgcatcatcaaatcgatcgagaagcag
ggcaaattcccgacctggctgatggcgcaggcgctgcgcatcggcgcaaaggaacagcag
ggcaaggcctccgtcctcgacctgccgctaaaagccctgcttgcccgcacgcttcttccc
aagatccgcgcccgcttcggcggcaggctcaaggcgctcgtatcgggcggcgcgccgctc
aaccccgatgtcggcctgttcttcgatgctatgggcctcaccctgctccagggctatggc
cagaccgaagccggtcccgtggtcagctgcaaccggcccagcgcgggcatcgccatggac
acggtcgggccgccactcaaaggggtggaggtcaagatcgcggacgatggcgaaatcctc
gtgcgcggcgaactggtcatgcacggctattggcgcaacccggtcgaaaccgaaaaagtg
ctgaaagacggctggcttcacaccggggatattggcgaattcgatgcgaaggggcgcatt
cgcatcaccgaccgcaaaaaagacctgatcgtcaatgacaagggcgacaatgtctccccg
caaaagatcgaagggatgctgacgctccagaatgagatcggtcaggcgatggtgcatggc
gaccgtcgcccctatctggtcggcctgatcgtgccggacgctgaatggacccgcgaatgg
gcgcaggccaatggcgtcgtgcctgccgacgcgcatgccaatccggcctatatggcggcg
ctgcgcgcggcagtggaccgggtcaatgccgacctgtctgtgatcgaacgggtgcgccgc
ttcatcctggccgacgaacccttcaccatcgacaatgaggaaatgaccccgtcgatgaag
atccgccgccatgtcatccgtaaacgctatgccgatcggatggacgcgctgtacaaggca
tga
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