Sphingobium xenophagum: CJD35_05830
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Entry
CJD35_05830 CDS
T05146
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJD35_05830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shyd03021
]
CJD35_05830 (rho)
03019 Messenger RNA biogenesis [BR:
shyd03019
]
CJD35_05830 (rho)
Transcription machinery [BR:
shyd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CJD35_05830 (rho)
Messenger RNA biogenesis [BR:
shyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CJD35_05830 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA_22
OB_RNB
Spore_III_AA
S1CSD-TOTE-2
GpA_ATPase
NACHT
AAA_25
Fungal_virus_P2_C
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
ASY44026
UniProt:
A0A249MRN8
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All DBs
Position
I:1203120..1204376
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AA seq
418 aa
AA seq
DB search
MHLKDLKKTAPADLVQLAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVDGEIRAPKDGERYFALVKLNTVN
FDDPDVVRHRVNFDNLTPLYPEQKLTLDPGDPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctcaagaaaaccgcgccagccgacctcgtgcaacttgcagaggaa
ctgggcgtcgagggcgcgtcgaccctgcgtaagcaggatctgatgttcgcgatcctgaag
gccgaggccgaaaatggcgagcagatcatgggcgagggcacgatcgaggtgctgcccgat
ggctttggcttcctgcgcagcccggaagccaatttcctggccggtcccgacgacatctat
gtctcgcccaatcaagtgcgccgctttggcctgcgcaccggcgacacggtggacggcgaa
atccgcgcacccaaggacggcgaacgctatttcgcgctggtgaagctcaacaccgtcaat
ttcgacgatcccgatgtggtccgccaccgcgtcaatttcgacaatctgacgccgctctat
cccgaacagaagctgacgctcgatccgggcgacccgacccagaaggacaagtcggcgcgc
gtcatcgacatcgtgtcgccgcagggcaagggccagcggacgctgatcgtcgcgccgccg
cgcgtcggcaagacggtgatgctccagaacatcgccaaggccattaccgacaatcatccc
gaagtgttcctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgacatgcag
cgcagcgtgaagggcgaggtcgtgtcttccaccttcgacgaacccgccacccgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcggctcgtggagcacaagaaggatgtg
gtgatcctgctcgattcgattacccgcctgggccgcgcctacaacacggtcgttccctcg
tccggcaaggtgctgaccggcggtgtggacgccaacgcgctccagcggcccaagcgcttc
ttcggcgcggcccgcaatatcgaggagggcggttcgctctcgatcatcgccacggccctg
atcgacaccggcagccggatggacgaagtcatctttgaagaattcaagggcaccggcaat
tccgaaatcgtgctggaccgcaaggttgccgacaagcgcatcttcccggcgctggacgtc
ggcaagtcgggcacccgcaaggaagaattgctggtcgacaaggccaagctttccaaaatg
tgggtgctgcgccgcatcctgatgcagatgggtacgatcgacgcgatggagttcctgctg
gacaagatgaaggacagcaagaccaacgaagatttcttcgattcgatgaaccagtaa
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