Sphingobium xenophagum: CJD35_07250
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Entry
CJD35_07250 CDS
T05146
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJD35_07250 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shyd03019
]
CJD35_07250 (recQ)
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_07250 (recQ)
Enzymes [BR:
shyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJD35_07250 (recQ)
Messenger RNA biogenesis [BR:
shyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJD35_07250 (recQ)
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJD35_07250 (recQ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASY44262
UniProt:
A0A249MSI6
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All DBs
Position
I:1490838..1492610
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AA seq
590 aa
AA seq
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MRRDIPTLLHDIFGFSAFRGVQEQVVGRVMAGLPTLAIMPTGAGKSLCYQLPSAALDGCC
VVVSPLIALMHDQLRAANAVGLRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASQEG
FRSLLRSARVALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADAHTRD
DILVQLGIPRDGLIISGFDRPNIRYAVHPRDGVSSQLADLVATHPGPGIVYAQTRAATEK
MAETLGRGGRPVRAYHAGLDPAVRARNQAAFIASEDMVMVATVAFGMGIDKPDVRFVAHA
GLPKSIEGYYQESGRAGRDGEPAVAHLFWGAEDFARARQRIMELDPSRQQGERTRIAALG
ALVETATCRRAILLRHFGENPPATCGNCDNCLSPPASVDATETARKYLSAVYRTGQSFGS
GHIEAVLTGGVTDKLRERGHDRISVYGIVSGDETALLRPVSRALLVRDALETTEHGGLML
GPNARPILRGEEEVRILVPPRRERRKRNARNGADANPVGDPLFDALRTCRRELAQEAGVP
PYVIFHDSTLREMAEQRPTSLRDLGMISGVGQKKLDAWGDAFLAAIRPFL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgcgacattcccacccttctccacgatatattcggcttttccgcctttcgcggg
gtacaggaacaggtggtcgggcgggtcatggcggggttgccgacgctggcgatcatgccg
accggggcgggcaagtcgctctgttaccagttgccgtcggccgcgcttgatggctgctgc
gtcgtcgtatcgccactgatcgcgctgatgcacgaccagttgcgcgcggccaatgcggtc
ggcctgcgcgccgccagcctgaccagcgtggacgccgactggcgggagacgcaggatcgc
ctgcgcaatggcgatctcgacctgctctatgtcgcccccgaacgcgccagtcaggagggg
tttcgttcgctgctccgctctgccagggttgcgctgttcgcgatcgacgaagcccattgc
gtgtccgaatggggccatgatttccgccccgactatcgcctgttgcgcccgctgctcgac
gaatttcccgacgtcccgcgcctggcgctcactgccacggcggacgcgcatacccgcgat
gatattctcgtccagctcggcatcccgcgcgatggcctcatcatctccggcttcgaccgg
cccaatatccgctacgccgtccatccgcgcgacggtgtttcgagccaactcgcagatctg
gtcgccacccatcccggccccggcatcgtctatgcccagacccgcgccgcgaccgagaaa
atggccgagacgctgggccgtggtggccgccccgtgcgcgcctatcatgccgggctcgac
cccgccgtccgcgcccgcaaccaggccgccttcatcgccagcgaagatatggtgatggtt
gccaccgtcgccttcggcatgggcatcgacaagcccgacgtccgctttgtggcgcacgca
ggactgcccaaatcgatcgagggctattatcaggaatcgggccgtgcagggcgcgatggc
gaaccggcggtcgcgcatcttttctggggtgcggaagatttcgcccgcgcccgtcagcgc
attatggaactcgacccatcccgccagcagggcgagcgcacccgcatcgccgcgctcggc
gcgctggtggagaccgccacctgccgtcgcgccatcctgttgcgccatttcggcgaaaac
ccgccggcgacctgcggcaattgcgacaattgcctgtcccctccggccagcgtcgacgct
accgaaaccgcgcgcaaatatctctccgccgtctatcgcaccgggcaaagcttcggctcc
ggccacatagaggcggtgctgaccggcggcgtcaccgacaaattgcgcgaacgcggccat
gacaggatttcggtctatggcatcgtgtcgggcgatgagaccgcgttattgcgcccggtg
tcgcgcgcgctgctggtgcgcgatgcgctggaaacgaccgaacatggcggcttgatgctc
ggccccaacgcccggcccatcctgcgcggggaggaggaggtgcgcatcctcgtgcccccc
aggcgcgaacggcgcaagcgcaacgcccgcaacggcgcggatgccaatccggtcggcgat
ccgctgttcgacgcgctgcgcacctgccgccgcgaactggcgcaggaggcgggcgtgccg
ccctatgtcatcttccacgattcgaccctgcgcgaaatggccgaacagcgccccaccagc
ctgcgcgatctgggcatgatcagcggcgtgggtcaaaagaagctcgatgcctggggcgac
gcgttcctggccgcgatccggccttttctgtaa
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