Sphingobium xenophagum: CJD35_07470
Help
Entry
CJD35_07470 CDS
T05146
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03030
DNA replication
shyd03410
Base excision repair
shyd03420
Nucleotide excision repair
shyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJD35_07470
03410 Base excision repair
CJD35_07470
03420 Nucleotide excision repair
CJD35_07470
03440 Homologous recombination
CJD35_07470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyd03032
]
CJD35_07470
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_07470
Enzymes [BR:
shyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CJD35_07470
DNA replication proteins [BR:
shyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJD35_07470
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CJD35_07470
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJD35_07470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
HHH_5
HAMP_N3
HHH
Motif
Other DBs
NCBI-ProteinID:
ASY44300
UniProt:
A0A249MSG4
LinkDB
All DBs
Position
I:complement(1538005..1540785)
Genome browser
AA seq
926 aa
AA seq
DB search
MTQNHLYLVDGSGYIFRAYHQLPPLTNQHGQPVGAVYGYTTMLWKLAEELGKAEGPTHMA
VILDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGYEADDLIA
SYTRAAIAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVVGKFGVQPEQLGDV
LALMGDSVDNVPGVPGIGPKTAAKLIVEYGGLEAALEAAPAMKKSKMQENLIAHADMARL
SRRLVALHDSMDLPEPLEDLALKGIPKEPLQDFLTHHGFKTLLNRLGAAAAAVAVAAVAS
GVPEPVATPVAPQETAIDRSLYETVVSEEALDRWIAQATAEGIVAVDTETDMLDCVSCQL
VGVSLATGPNKACYIPIGHGGRDMFAEKPEQLPLATVLAKLKPLLEDDAVLKVGQNLKYD
MTVLRRHDIAVTPFDDTIVMSFDLDAGQSLSGHGMDEAARTHLNHECISFKEVVGTGKSQ
ISFAEVPLDKATAYAAEDADVTLRLWKLFKTRVANEGANRVYELVDRPLVPVIARMEHRG
IKVDREHLARLSGEFTAGIAALETEIHELAGQPFAIGSTQQLGAILFDKMGYKGGKKGKS
GAYSTDVTILEQLAAQGAPIASKILEWRQLSKLKSTYTDALQAQINKDTGRVHTSYSLTG
AQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPSNVILAADYSQIELRLAAHMADVPAL
KEAFAAGEDIHAATAKELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQEM
IAKYYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIRASIQHERQGAERAAINAP
IQGTSADIIKRAMARMEPALEAAGLPGVRMLLQVHDELVFELPEDDVDAASAVIRRVMES
AAEPIVKLSVPLGVEIGTGPSWGAAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaatcacctctatctcgtcgatggcagcggctatatttttcgcgcctatcac
cagctcccgccgctcaccaaccagcatggccagccggtcggcgctgtctatggctatacg
acgatgctgtggaaactggcggaggaactgggcaaggcggaaggaccaacgcatatggcg
gtgatcttggacaaggggtcgcacaccttccgcaacgatatgtacgaccagtataaggcg
aaccgcccgcccgcgcccgaagatctggtcccgcaattcccgatgattcgggacgcgacc
cgcgccttctccctcccctgtatcgaggaggcgggatatgaagcggacgacctgatcgcc
agctataccagggcggcgattgcggcgggatggcatgtcaccatcgtgagttcggacaag
gatctgatgcagctgatccagccgggcgtcgacatgtatgatacgatgaagaatgaacgg
cgcggggccgattatgtcgtcggcaaattcggcgtacagccagagcaacttggcgacgtg
ctcgcgctgatgggcgacagcgtggacaatgtgccgggtgtgccgggcatcggccccaag
acggcggccaagctgatcgtcgaatatggcgggctggaagcggcgctggaggcagcgccg
gcgatgaagaagtccaaaatgcaggaaaatctgatcgcccatgccgacatggcgcgcctg
tcgcggcggctggtggcgctgcacgacagtatggatctgcccgaaccgttggaggatctg
gcgctcaagggtattcccaaggagccgttgcaggatttcctgacgcatcacggcttcaag
acgctgctcaaccggctgggcgccgcagccgccgccgtcgcggtggccgcggttgcctcc
ggcgtgccggaacccgtcgccaccccggtcgcgccgcaggaaacggcgatcgaccgcagc
ctgtatgaaaccgtcgtcagcgaagaagcgctcgaccgctggatcgcacaggcgacggcg
gaagggatcgtcgcggtcgataccgaaaccgacatgctcgattgcgtgtcctgccagttg
gttggcgtgagcctggcgaccggccccaacaaggcctgctatatcccgatcggccatggg
gggcgcgacatgtttgccgaaaagccggagcaattgccgctggcgaccgtgctggcgaag
ctcaaaccgctgctggaggatgatgcagtcctgaaagtggggcaaaatctgaaatatgac
atgaccgtgctgcggcggcacgacatcgccgtcacgccgttcgacgacacgatcgtcatg
agcttcgacctggatgccggtcaaagcctgtcgggccacggcatggatgaggcagcacgc
acgcacctcaatcatgagtgtatcagcttcaaggaggtggtcggcaccggcaagagccag
atcagctttgcagaagtgccgctggacaaggcgaccgcctatgccgccgaggatgcggac
gtgacgctgcgcctgtggaagctgttcaagacgcgggtagccaatgaaggcgcaaaccgc
gtctatgaactggtcgaccgtccgctggtgccggtgatcgcgcggatggagcatcgcggg
atcaaggtggaccgcgagcatctggcgcggctgtcgggcgaatttaccgctggcatcgcc
gcgctggagacggagattcacgaactggccgggcaacccttcgcgatcggatcgacccag
caactgggcgcgatcctgttcgacaagatgggctataagggcggcaagaagggcaagtcg
ggtgcctattccaccgacgtcaccatccttgagcaactggccgcgcaaggcgcgccgatc
gccagcaaaatattggaatggcgtcagctttccaaactgaaatccacctataccgacgcg
ctgcaagcccagatcaacaaggatacaggccgggtccacaccagttactcgctgaccggg
gcgcagaccggacggctttcctcgaccgatcccaacctgcaaaatatcccgatccgcacc
gaagtcgggcggcagatccgccacgcctttgtcgcggaaccaagcaatgtcatattggcg
gcggactatagccagatcgaattgcggctggccgcgcatatggccgacgtgcctgcgctg
aaagaggcgttcgcggcgggcgaggatattcacgcggcgaccgccaaggagctgtttggc
gaggtcaaccgcgacacgcgcgggcgggctaagacgatcaacttcgcgatcctctacggc
atttcccgctggggactggccggacggctggagatcagcgcggacgaggcgcaggagatg
atcgccaaatattatgagcgcttccccggcatcagcatctatatcaacgaaacgatcgag
aaggcgcgggagcgcggctataccgagactttattcgggcgaaaaacctggttcccgcgc
atccgcgcatcgatccagcacgaacggcagggcgccgaacgcgccgcgatcaacgcaccg
atccaggggaccagcgccgacatcatcaaacgggcgatggcgcgcatggaaccggcgctg
gaggcagcggggctgccgggcgtcaggatgctgctgcaagtgcatgacgaactggtgttc
gaactgccggaggacgatgtggacgccgccagcgcggtgatccgccgcgtcatggaaagc
gccgccgagccgatcgtaaaactgagcgtgccgttgggcgtggaaatcggcacggggcca
agttggggcgccgcgcattga
DBGET
integrated database retrieval system
