Sphingobium xenophagum: CJD35_08095
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Entry
CJD35_08095 CDS
T05146
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJD35_08095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shyd03021
]
CJD35_08095
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_08095
Enzymes [BR:
shyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJD35_08095
Transcription machinery [BR:
shyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJD35_08095
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJD35_08095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
ASY44409
UniProt:
A0A249MTD5
LinkDB
All DBs
Position
I:1677978..1678322
Genome browser
AA seq
114 aa
AA seq
DB search
MARVTVEDCVDKVTNRFDLVLLAAQRAREISGGAELTVDRDRDKNPVVALREIAEETVLP
AELHDSVVASLQKVQIDDDDTPDEIGSIAQSAEALRLTAAAPPRNQNIGGDYDG
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgcgttaccgtcgaagattgcgtcgacaaggttaccaaccgttttgacctcgtt
ctgctcgccgcccagcgcgcgcgggaaatttcgggcggcgcagagctgaccgtggaccgc
gaccgggacaagaatcccgtcgtcgccctgcgcgaaatcgctgaagaaacggtgctgccc
gccgaactgcatgattcggttgtcgcctcgcttcagaaggtgcagattgacgatgacgat
acgccggacgaaatcggctcgatcgcgcagtcggccgaagccctgcgcctgaccgccgct
gcgccgccgcgcaaccagaatatcggcggcgattacgacggctga
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