Sphingobium xenophagum: CJD35_10685
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Entry
CJD35_10685 CDS
T05146
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJD35_10685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shyd03019
]
CJD35_10685
03009 Ribosome biogenesis [BR:
shyd03009
]
CJD35_10685
Enzymes [BR:
shyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJD35_10685
Messenger RNA biogenesis [BR:
shyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJD35_10685
Ribosome biogenesis [BR:
shyd03009
]
Prokaryotic type
rRNA helicases
CJD35_10685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASY45754
UniProt:
A0A249MX59
LinkDB
All DBs
Position
I:complement(2163130..2164920)
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AA seq
596 aa
AA seq
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MAFETLPPILAQALTTKGYENLTEVQASVIEPEAIGRDMIVSAKTGSGKTVAFGLAMAGE
LLNEEGRLPPPAWPLALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDAARERKAL
AQGAHIVVGTPGRLRDHLERGALDLSALKTAVLDEADEMLDMGFREDLEGILDATPDGRR
TLLFSATMPKPIVALARRYQKDAFQIQSAGNDRGHGDISYQAMTVAPADIENAVVNLLRF
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDKRARVCVAT
DVAARGIDLPTLTLVVHVEIPRDVETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVEGMLK
GAKIPVEWTSAPTKEAIAAQDAERLRARLLEPMELEESDWALGGELLEAKSAKEIAAMLV
RSARAALPAPEELLDGSEAPARRDGPRPGFEDTQWFRINIGRRQNADPRWILPLICRRGH
VSRGDIGAIRITTNDTMFEIPKAIASKFLAAVRRTGEAGDEGADVLFDPVDGAPREEARE
KRKQLRPANGDRPNRSGPPRGGPGNFSRGGAAPHSPRPFKGAGAGGPRKGPPRSRG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgaaactctcccccccatcctggcgcaggcgctcacgacgaaggggtatgaa
aacctgaccgaagtgcaggcgtcggtcatcgaacccgaagcgattggccgcgacatgatc
gtgtcggccaagaccgggtcgggcaagaccgtcgcctttggcctggccatggcgggcgaa
ttgctgaacgaggaaggccgcctgcccccgcccgcctggccgctggcgctggtcatcgcg
ccgacgcgcgaactggcattgcaggtcagccgcgaactggaatggctctacgctggagcg
cgggcgcgcatcgccacctgcgttggcggcatggacgccgctcgcgagcgcaaggcgctg
gcgcagggcgcgcatatcgtcgtgggcacgccgggccgcctgcgcgaccatctggaacgc
ggcgcgctcgacctgtcggcgctgaaaaccgccgtgctggacgaggccgacgaaatgctc
gacatgggctttcgcgaagatctggagggtattctcgacgccacccctgatggccgccgc
accctgctgttttcggcgaccatgcccaagccgatcgtggcgctggcccgccgctatcag
aaggatgcgttccagatccagtccgccggcaatgatcgcggccatggcgacatcagctat
caggcgatgaccgtcgcgcccgccgacattgaaaatgccgtggtcaacttgctgcgcttc
catgaagcggagacggcgatcctgttctgcgccacgcgcgacaatgtccgccatctccac
gccagcctgaccgagcgtggctttgccgccgtcgcgctgtcgggcgaacatagccagaat
gagcgcaaccatgcgctgcaagcgctgcgcgacaagcgagcgcgcgtgtgcgtggcgacc
gacgtggccgcgcgcggcatcgacctgcccacgctgacgctggtggtgcatgtcgaaatc
ccgcgtgacgtcgagaccatgcagcatcgctccggtcgtaccggccgcgcgggcaagaag
ggcaccgccgtcctgatcgtcccctatccacgccgtcgccgggtagaagggatgctgaag
ggcgcgaaaattcccgtcgaatggacgtccgcccccaccaaggaagcgatcgccgcgcag
gatgccgaacggctgcgcgcgcgcctgctggagccgatggaactggaagagtccgactgg
gcactgggcggcgaactgctggaagccaagagcgccaaggaaatcgcggccatgctggtg
cggtctgcccgcgccgcgctgcctgcgcccgaagagctgctggacggcagcgaagcgccc
gcccgccgcgacgggccacgtcccggttttgaggatacccagtggttccgcatcaatatc
ggtcgccgccagaatgccgatccgcgctggatcctgccgctgatctgccgtcgcggccat
gtgtcgcgcggtgacatcggcgcaatccgcatcaccaccaacgacacgatgttcgaaatt
cccaaggcgatcgcgtccaaattcctggccgccgttcgtcgcaccggcgaagcgggtgac
gagggcgcggacgtgctgttcgatccggtcgatggcgccccgcgcgaggaagcgcgcgaa
aagcgcaagcagttgcgccctgccaatggcgaccgccccaaccgcagcggtccgccccgc
ggcggtcccggcaatttttcgcgtggcggcgcagcgccgcatagcccacgcccgttcaag
ggcgcgggcgcaggcggcccgcgcaaggggccgccgcgcagccgggggtaa
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