Sphingobium xenophagum: CJD35_11695
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Entry
CJD35_11695 CDS
T05146
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd00300
Lysine biosynthesis
shyd00470
D-Amino acid metabolism
shyd01100
Metabolic pathways
shyd01110
Biosynthesis of secondary metabolites
shyd01120
Microbial metabolism in diverse environments
shyd01230
Biosynthesis of amino acids
Module
shyd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CJD35_11695
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CJD35_11695
Enzymes [BR:
shyd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
CJD35_11695
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ASY45030
UniProt:
A0A249MUI6
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All DBs
Position
I:2357804..2359027
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AA seq
407 aa
AA seq
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MGPIPAWFAGEEGMLLIGGYGAASLVDEVGDTPLFAYDMDIVRAQIRRFREAMPQALHLH
YAIKANPYAPLLTAMAEQVDGFDIASGGELEMALAAGMDPARISFAGPGKRNDELEAAIF
AGVTLNLESEGEGRRALAIGQRIGKTPRVAVRVNPDFDLKGSGMRMGGGAKPFGVDADRA
AALARAMIDGGADWRGWHIFAGSQNLDAMAIIETQAATIALAARLSEAVGVTPPLVNLGG
GFGLAYFPGDVPLDIRPIGVALDTAFESLPDILKGSAFAIELGRWLVGEAGVYLTRVIDV
KISQGETFVIVDGGLHHQLAASGNFGTVVRRNYPIALANHFGAPPAADPATVVGCLCTPI
DRLGDRIALPPVQEGDLIAIFLAGAYGASASPAAFLGHPSPREVLLG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgggaccaatcccggcgtggtttgcgggcgaagaggggatgctgctgatcggcggctat
ggcgcggcgagtctggtcgacgaagtgggcgatacgccgctctttgcctatgacatggac
attgtccgggcgcagatccgccgttttcgcgaagccatgccacaggcgcttcacctccat
tatgcgatcaaggcgaacccctatgcgccgctgctgacggcgatggcggagcaggtggac
ggcttcgacattgcgtcgggcggtgaactggagatggcgctggcggcgggcatggacccg
gcacggatcagctttgccgggccgggcaagcgcaatgacgaactggaagcggcgatcttt
gccggggtcacgctgaaccttgaatccgaaggggaggggcggcgcgcgctcgccatcggc
cagcggataggcaagaccccgcgcgtcgccgtgcgggtgaacccggactttgatctcaaa
ggatcagggatgcggatgggtggcggggccaaaccctttggcgtcgatgccgatcgcgcc
gccgcgctcgcgcgcgcaatgatcgatggcggtgcggactggcgcggctggcatatcttt
gccggcagccagaatctcgatgcgatggcgatcatcgaaacgcaggcggcgacgatcgcg
ctggccgcccgcctgtccgaagcggtgggcgtcacgccgccgctggtcaatctgggcggc
ggctttggccttgcctatttccccggcgacgtgccgctcgacatccgccccatcggcgtc
gcgctcgacacagcgttcgaatcgctgccggatattctcaagggcagcgcctttgcgatc
gaactgggccgctggctggtcggggaggcgggcgtctatctgacccgcgtgatcgatgtg
aagatcagccagggcgaaaccttcgttatcgtcgatggcgggctgcatcatcaactggcg
gccagcggtaatttcggcacggtggttcgccgcaactatccgatcgcgctcgccaaccat
ttcggcgcgccgccagccgccgatcccgcgacggttgttggctgcctctgcacgcccatc
gaccggctgggtgacaggattgcgctgccaccagtgcaggaaggcgacctgatcgccatt
ttccttgccggtgcctatggcgcatcagccagtccggcggcatttcttggtcatccaagt
cctcgcgaagttttacttggctga
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