Sphingobium xenophagum: CJD35_12220
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Entry
CJD35_12220 CDS
T05146
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
shyd
Sphingobium xenophagum
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyd03032
]
CJD35_12220
03036 Chromosome and associated proteins [BR:
shyd03036
]
CJD35_12220
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_12220
DNA replication proteins [BR:
shyd03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
CJD35_12220
Chromosome and associated proteins [BR:
shyd03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
CJD35_12220
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
CJD35_12220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ASY45120
UniProt:
A0A249MUS1
LinkDB
All DBs
Position
I:complement(2511034..2511324)
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AA seq
96 aa
AA seq
DB search
MIRSELIQKLADENPGLNLAEVEKIVDLFFREIVDRLASGGRVELRGFGAFTTRAREART
GRNPRTGEQVPVSAKRVPYFKPGKEMRERLNVKGES
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgatccgttcggaattgatccagaaactggctgatgaaaatccggggttgaaccttgcg
gaggtggagaagatcgtcgatcttttcttccgcgagattgtcgaccggctggcgtcgggc
ggtcgtgtggaactgcgcggctttggcgctttcacgacgcgcgcgcgcgaagcccgcacc
gggcgcaacccgcgcaccggggagcaagtgccggtatcggccaagcgcgtcccctatttc
aagccgggcaaggaaatgcgcgagcggctgaacgtcaagggcgaaagctga
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integrated database retrieval system
