Sphingobium xenophagum: CJD35_13115
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Entry
CJD35_13115 CDS
T05146
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
shyd
Sphingobium xenophagum
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_13115 (addB)
Enzymes [BR:
shyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJD35_13115 (addB)
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CJD35_13115 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ASY45270
UniProt:
A0A249MV77
LinkDB
All DBs
Position
I:2702820..2705789
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AA seq
989 aa
AA seq
DB search
MGDRTRPALFSIPAHRAFSDALVAGLLARHGGDPMALTQGMILLPSNRAVRAVSDAFVRA
SGGGLLLPRLAAIGDPDIGEQVGSALDPLGEGDALPPAIAPMRRQMILARMVQQVKGDID
AGQALQLGQALGAVLDQMQVERVPVTALRDLSLSDELSRHWQTSLHLFEIVIARWPDELA
RLGCMDLTERRNQLFDRLAARWRDHPPSGFVVAAGIASTAPAVAGLLRRIGEMPGGMVVF
AGLDQHMDDEAWQAIGPFDPDPVTGLAPAGHESHPQYALKRLLHAMSATRDDVAQWRWGS
EHDARAVRGRNISNAMLPPRLTSRWRDLKTADRSLAGVAALEVATPGEEAQAIAIALREA
LETEKRTAALVTPDRQLATRVSAHLKRWGIEADDSAGLPLSRLPPGTLLIAIAQAVAERF
APVPLLTLLKHPLVMRGEGRLAWLEGVRALDLLLRGPRPQAGLAGIDLLLMPRDDDRQRT
IRGQVRDWWPAARALLEPLERAFAVATDLATQLAAIREQAGALTGDAVWTGHQGHAAADL
FAEMEGAADEGPRQADMRALPMLLDHVLGGVSVRPPQGGHPRIAILGLIEAQLVQPDLMI
LGGLNEGTWPGLPAPDPWLAPRIRRELGLPGVETRIGLAAHDFASALGAPHVLITRAKRG
SGGPAVASRLWLRLKAMAGPQWKVADSYAVLARTLDTPAIHNPEGRPAPAPPASVRPTVI
PVTDVDRLKADPFAFYARRILRLARLDPVDADAGPAWRGTAVHDILQQWAEAGILDPADL
EARARAMFDRPEVHPLLRALWQPRLIEAIRWIAAEVVRDKAEGRTILAVEKEGRADIAEV
TLMGKADRIDRLPDGTLGIIDYKTGKPPSAAQVKAGFALQLGLLGVIAENGGFDCITGKR
TAGGFEYWSLAKKGDQFGYRESPVDPMGARNKIVTDQFTARVHQQFEELAQAFLLGTAPF
RAEINPEVANYGDYDQLMRLEEWYGRDDG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatcgcacgcgccccgcgctattttccatcccggcgcaccgcgccttttccgat
gcgctggttgcgggcctgttggcgcgccatggcggcgatccgatggcgttgacgcagggc
atgatcctgctgcccagcaatcgcgcggtccgcgcggtcagcgatgcgttcgtgcgcgcg
tcgggcggggggctgttgctgccgcgtctggcggccatcggcgacccggatattggcgag
caggtcggcagcgcactcgatccgttgggggagggggacgcgctgcccccggcgattgca
ccgatgcgccgccagatgatcctggcgcggatggtgcagcaggtgaagggcgatattgac
gcggggcaagcgctgcaactggggcaggctctgggcgcggtgctggatcagatgcaggtg
gagcgggtgccagtcacggcgctgcgcgacctcagcctgtccgacgaattgtcgcggcac
tggcaaacgtcgctgcatctgttcgagatcgtgatcgcccgctggcccgatgaactggcg
cggctgggctgcatggatctgaccgagcggcgcaaccagctgttcgaccggctggcggcg
cgctggcgggatcatccgccgtcgggctttgtcgtggcggcgggcattgcgtcgacggct
ccggcggtcgcagggctgttgcgccggataggcgaaatgccgggcggcatggtcgtgttc
gccgggctggaccagcatatggacgacgaagcgtggcaggcgatcggccccttcgatccc
gatcccgtcaccggcctggcccccgccgggcatgaaagccatccgcaatatgcgctgaaa
cggctgctccacgccatgagcgcgacccgtgacgatgtggcgcagtggcgctggggcagc
gagcatgatgcgcgggcggtgcgcgggcgcaatatctccaacgcaatgctgccgccccgg
ctcaccagtcgctggcgtgacctgaagaccgcagaccgttcgctggcgggggtcgctgcg
ctggaagtggcgacaccgggcgaggaagcacaggccatcgccatcgccctgcgcgaggcg
ctggagacggagaagcgcaccgccgcactggtgacgcccgaccggcaactggcgacgcgg
gtatctgcgcatctcaagcgctggggcatagaggcggacgattcggcgggcttgccgctt
tcacggcttccgcccggcactttgctgatcgcgatagcgcaggcggtggcggaacggttc
gcgccggtcccgctgctgacattgctcaaacatccattggtcatgcggggcgaagggcgg
ctggcatggctggagggtgtgcgcgcgctcgacctgctgttgcgcgggccaaggccgcag
gcggggctggcagggatcgacctgctgctgatgccgcgcgatgatgatcgccagcggacc
atacgcggacaggtgcgcgactggtggcctgccgcgcgcgccttgctggaaccgctggaa
cgggcctttgccgtcgcaactgatcttgccacgcaattggcggcgatccgcgagcaggcg
ggcgcgctgacgggggacgccgtctggacggggcatcaggggcatgccgccgccgatctg
ttcgccgagatggagggtgccgccgatgaaggcccgcgccaggcggacatgcgcgcgctg
ccgatgctgctcgatcatgtgctgggcggcgtgtcggtgcgtccgccgcagggtggccac
ccgcgcattgcgatattggggctgatcgaggcgcaactggtacagccggacctgatgata
ttgggcggcctgaacgaaggcacatggcccggcctgcccgcgcctgatccgtggctggcg
ccgcgtatccggcgggaactgggcttgccgggggtggagacgcgcattggcctggcggcc
catgatttcgccagtgcgctgggtgcgccccatgttctgatcacgcgcgcgaaacgcggg
agtggtggcccggcggtggcgtcgcggctctggttacgactgaaggctatggcggggccg
caatggaaagtggcggatagctatgccgtgctggcgcgtaccctcgatacgcccgctatc
cataaccctgaaggccgccccgcacccgcgccgcctgcatcggttcgcccaaccgtcatc
cccgtcaccgatgtggaccggttgaaggccgatcctttcgcattctacgcccggcgcata
ctgcggctcgcacggcttgacccggtcgatgccgatgccggaccggcctggcgcggaacg
gcggtgcatgacatcctgcagcagtgggcggaagccgggatactggaccccgccgatctg
gaagcgcgcgcccgcgccatgttcgaccggccagaggtccatccgctgctgcgcgcgctg
tggcagccgcgcctgatcgaggcgatccgctggatcgcggcggaagtggtgcgcgacaag
gcggaagggcgcaccatccttgccgtcgaaaaggaagggcgcgcagacattgccgaggtg
acgctgatgggcaaggcggacaggatcgaccgcctgcccgacggcacgctaggcattatc
gactacaagaccggcaagccgcccagcgcagcgcaggtgaaggcgggctttgcgctgcaa
ttggggctgctgggcgtgatcgcggaaaatggcgggtttgactgcattacggggaagagg
accgcaggcggctttgagtattggtcgctcgccaagaagggcgatcagttcggctatcgc
gaaagtccggtcgatccgatgggcgcgcgcaacaagatcgtcacggaccagtttaccgcc
agggtccatcaacagtttgaagagctggcgcaggccttcctgctggggacggcgcccttc
cgtgcggaaatcaaccccgaagtcgccaattatggcgattatgaccagctgatgcggctg
gaggaatggtatggccgcgacgatggctaa
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