Sphingobium xenophagum: CJD35_14050
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Entry
CJD35_14050 CDS
T05146
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJD35_14050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_14050 (mfd)
Enzymes [BR:
shyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJD35_14050 (mfd)
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJD35_14050 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
RecG_dom3_C
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
ASY45428
UniProt:
A0A249MVS9
LinkDB
All DBs
Position
I:2874558..2878034
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AA seq
1158 aa
AA seq
DB search
MTDLQKILRAKAPLTLSGVPAGFQPWLLADIARAAHGAGSARAVFVASDEQLMRAVSETA
HYFAPEIEIIEIPAWDCLPYDRASPSLRTASARLAGLHALQAKPKGPQLVLTTLNALTQR
TLTPFRIRQLVAKLAPKERIAITRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGE
DQPLRLDFFGDEIETVRRFDPTDQRTTGSVEGFTLLPASEALLDEDTIKRFRGRYREIFG
ATATGDPLYQAISEGRRLAGMEHWLPLFEEKLVPLSDHLGDDAVIIRDHGVVGAADSRFE
AIRDYHANRVQAKSSDPGAYRPLKPDLLYLDAAEWDAVVARWPMHVATPFHEPDSATVLD
FAVDGPRDFAPERAQNANVYDAVGKHIAALQRTDKKVVIASYSAGARERLSGLLADHGVR
RMAAADDWQEALGLAANGSVVLTILPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSAD
AFLAELATLSPGDLVVHMDHGIGRYEGLTQIPVSKTAHDCVALSYAGGDKLFVPVENLEV
LSRYGSDSEGVGLDKLGGEAWQRRKAKMKERIREIAGELLKTAAERALRAATVAEPDNAG
YPAFVDRFPYQETEDQERAILDVIEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAG
MQVVLICPTTLLARQHHMQFEERFRGFPVNIGRLSRLVPDKEAKAVKAGLADGTVDIVVG
THALLTKGIEFKRLGLVIVDEEQRFGVTHKERLKALKTDVHVLTLTATPIPRTLQMAMSG
LRELSVIQTPPVDRLAVRSYIMPWDGVVIREALLREHYRGGQSFFVVPRIADLTEIEEYL
RTEVPEIKAIVAHGQMSATQVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRAD
RFGLAQLYQLRGRVGRSKTRAYAYMTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHD
LDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILDAKAGGAGLEARSDSFSPQISVDAP
IMIPDDYVPDLDLRMGLYRRLNEIEDRQGLESFAAELIDRFGKLPAPTQNLLKIIEIKQN
CVRANIAKIDVGQKGALVSFFEDRFPNPAGLVAYIQRLDGVARLRPDSKVVVNRNWADSA
ARLNGALQLSKGLAKAAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccagaaaatcctccgcgccaaagcgccgctgaccctgtcgggcgttcct
gcggggttccagccctggctgctggcggacatcgcccgcgccgcgcatggtgcaggttcg
gcccgcgccgtgttcgtcgcctccgacgaacaactgatgcgtgcggtctcggaaacggcc
cattatttcgcgccggagatcgagatcatcgaaatcccggcctgggactgcctgccctat
gaccgcgccagcccttcgctgcgcaccgcgtcggcacgcctggctggccttcacgccttg
caggccaagcccaaaggcccgcaactggtgctgaccacgctcaacgccctgacgcagcgg
acgctgaccccgtttcgcatcagacagttggtggcgaagctggcgcccaaggagcggatt
gcgatcacccgccttgccgacatgctgcaagccaatggctatgtccgcaccgataccgtt
catgatcgcggcgaattcgcgattcgcggcggcattgtcgatctgtttccgggcggtgag
gatcaaccgttgcgcctcgacttcttcggtgacgagatcgagacggtccgccggttcgac
cccaccgatcagcgcaccaccggcagcgtggaaggcttcaccctgctgccagcgtccgaa
gcgttgctggacgaagatacgatcaagcgctttcgcggccgctatcgcgaaatattcggt
gcgaccgcgaccggcgatccgctctatcaggcgatcagcgaggggcggcggctggcgggc
atggaacattggctgcccctgtttgaggaaaagctggttcccctgtccgaccatctgggc
gacgatgccgtcatcatccgcgaccatggcgtcgtcggcgcggcggattcccggtttgag
gcgatcagggactatcatgccaaccgggtccaggcgaaatcgtccgatccgggcgcctat
cgcccgctcaagcccgatcttctctatctagacgctgccgaatgggacgcggtcgtcgcc
cgctggccgatgcacgtcgcgacgccgtttcacgaaccggacagcgccaccgtgttggac
tttgcggtcgatggtccgcgcgatttcgcgccggaacgggcgcagaacgccaatgtctac
gacgcggtcggcaagcatatcgcggcgttgcagcggacagacaaaaaggtcgtaatcgcc
agctattccgccggtgcgcgcgaacggctgtcgggcctgctggccgaccatggcgtcagg
cgcatggcggcggcggacgattggcaggaagcgctggggctggccgccaatggcagcgtg
gtgctgaccatcctgccgctcgaccatggtttcaccgcgcccgacgtcgcggtgctgacc
gaacaggacatgctgggcgatcgcctggtccgccgggccaagcgcaagaagagcgccgac
gccttccttgcggaactggcgaccctctcgcccggtgatctggtggttcatatggaccat
ggcattggccgttatgaaggactgacccagatcccggtcagcaagaccgcgcatgactgc
gtagcgctcagctatgccggcggcgacaagctgttcgtgccggtcgaaaatctcgaagtc
ctttcccgctatggctccgacagcgaaggcgtgggcctcgacaagctgggcggcgaagcc
tggcagcggcgcaaggcgaagatgaaggagcgcatccgcgaaatcgcgggtgaactgctc
aagaccgctgcggaacgcgcgctgcgcgcggccaccgtcgctgaaccggacaatgcaggc
taccccgccttcgtcgatcgcttcccctatcaggagacggaagatcaggagcgcgccatt
ctggacgtgatcgaggatctgggcgctggcaagccaatggatcggctcgtctgcggcgat
gtgggattcggcaagaccgaggtggcgttgcgcgcggccttcgtcgcggcgatggcgggg
atgcaggtggtgctgatctgccccaccaccctgctggcgcgccagcatcatatgcagttt
gaggagcgctttcgcggcttcccggtcaatatcggtcgcctctcccgcctggtccccgac
aaggaagccaaggcggtcaaggcgggccttgccgacggcacggtcgatattgtcgttggc
acccacgcgctgctgaccaagggtatcgagttcaagcggctgggcctggtcatcgtcgat
gaagaacagcggtttggcgtgacccacaaggaacggctgaaggcgctcaagaccgacgtg
catgtgctgaccctcactgccacgccgatcccgcgcacattgcagatggccatgtccggg
ctacgcgaactgtcggtcatccagaccccgccggtcgatcgcctggcggtgcgcagttac
atcatgccatgggacggggtggtgatccgcgaagcgctgctgcgtgaacattatcgcggc
gggcagagcttcttcgttgtgccccgcatcgccgacctgaccgagatcgaggagtatctc
cgcaccgaagtgccggaaatcaaggcgatcgtcgcccatggccagatgagcgccacgcag
gtggaagaacgcatgtcggccttttacgacaagcgctacgacgtgctgctctccaccacc
atcgtcgaatccgggctggacattcccagcgccaacacgctgatcatccatcgcgccgac
cgtttcggcctcgcccaactctatcagttgcgcggtcgcgtgggccggtccaagacccgc
gcctacgcctatatgacgacgcccgccaaccgcatcattaccgaaacggcggaaaagcga
ctgaaagtgctgtccgacctcgacacgctgggcgctggtttccagcttgcctcgcacgat
ctcgacattcgcggcgcgggcaatctggtcggcgacgaacagtcgggccatatccgcgaa
gtcgggttcgaactataccagtcgatgctggaagaggcgatcctcgacgccaaggcgggc
ggcgctggccttgaagcgcgcagcgacagcttctcgccccagatcagcgtcgatgcgccg
atcatgatccccgacgattatgtccccgacctcgacctgcgcatgggtctctatcgccgc
ctgaacgagatagaggatcggcaggggctggaatcctttgccgctgaactgatcgaccgt
ttcggcaagctgcccgcccccacgcaaaacctgctcaagatcatcgagatcaagcagaat
tgcgtgagggcgaacatcgccaagatcgacgttgggcaaaaaggcgcgctggtcagcttc
ttcgaggatcgcttccccaatccggcgggcctggtcgcctatatccagcggctggacggc
gtggcccggctgcgacccgacagcaaggtggtggtcaaccgcaactgggccgattccgca
gctcgcctcaacggcgcgttgcaattgtcgaagggtctggccaaggcggcagcatga
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