Sphingobium xenophagum: CJD35_14365
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Entry
CJD35_14365 CDS
T05146
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJD35_14365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shyd03019
]
CJD35_14365
Messenger RNA biogenesis [BR:
shyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJD35_14365
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
DUF8152
Motif
Other DBs
NCBI-ProteinID:
ASY45482
UniProt:
A0A249MW18
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All DBs
Position
I:complement(2945730..2947367)
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AA seq
545 aa
AA seq
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MKPKDELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGMTFGDPNYPGIELVLPDLSFIEE
RRKDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLKLEEEGLTKEVKLHVI
PNEGSFELGPFGFRYMPLAHSIPEGNALVIDTPYGRIFHTGDWKLDDQPLLGVPSTPEQL
TAVGDQGVLALVCDSTNVFNDKASGSEGDVREGLMQAIEGARGRVLVTTFASNAARVQTL
GEVATAMGRKVCVAGRSLDRIIGMAKASGYLKDFPPTVDWDDAMKLPRDEVMIIATGGQG
EARAALARIAFDSHPIKLTDGDLVVFSSKQIPGNEIAIGRIQNALAAKNIVMVTDRQAEV
HVSGHPGRPELEAMYRWIRPEILLPVHGERRHMAEQARLGLATGIPNAVVQSNGDLLRLA
PGAPAIIGREEVGRLVLDGDVILPAEGATMNERRKLGLHGQISVAVALDAKGRLIGRPTL
RTQGVPVEEDKADFLAEAADDAADVIAKGSHEEEAVRERIRLAVRRAATRWTGKKPIVDV
LLIRA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccaaagatgagctgctcttcctggccctcggcgggtcgggcgagattggcatg
aacgtcaatctatatggatgccagggcaaatgggtgatggtcgatctcggcatgaccttt
ggcgatcccaattatccgggcatcgaactggtgctgccggacctcagctttatcgaggaa
cggcgcaaggatctgctcggcatcgtgctgacccacgggcatgaggaccatatcggcgcg
atcccctatctggcggccgatctgggcgtgccgctctatgccacgccgtttaccgctggc
cttatccgcctgaagctggaggaagaggggctgaccaaggaagtcaagcttcacgtcatt
cccaatgaaggcagtttcgaactgggtccgttcggcttccgttacatgccgctggcgcat
tccatcccggaaggcaatgcgctggtcatcgatacgccctatggccgcatattccatacc
ggcgactggaagctggacgatcagccgctgctcggcgtcccctcgaccccggagcaattg
acggcggtgggcgatcagggggtgctggcgctggtatgcgacagcaccaatgtgttcaac
gacaaggccagcggttccgaaggcgatgtccgcgaagggctgatgcaggcgatagaggga
gccagggggcgggtgctcgtcaccacctttgcgtccaatgccgcgcgtgttcagacgctg
ggcgaagtggcgacggcgatgggacgcaaggtgtgcgtcgcgggccgctcgctcgacagg
atcatcggcatggccaaggccagcggctatctcaaggattttccgccgacggtcgattgg
gacgatgcgatgaaactgccgcgcgatgaggtgatgatcatcgccaccggcggtcagggg
gaggcgcgcgccgcacttgcgcgcatcgcgttcgacagccatccgatcaagctgaccgac
ggtgacctggtcgtcttttcgtccaagcagatccccggcaatgaaatcgcgatcggtcgc
atccagaacgcgctggcggcgaaaaatatcgtgatggtcacggaccggcaggccgaagtc
catgtgtcgggccatccggggcgtcctgaactggaagccatgtatcgctggatacggccc
gaaatattgctgccggtccatggcgaacgacggcatatggccgaacaggcgcggcttggc
ctggcgacgggtatccccaatgcggtggtgcagtccaatggcgatctgctgcggctggca
ccgggcgcgccggcgataattgggcgggaagaggttggtcgactggtgctggatggcgac
gtaatcctgccggcggaaggcgcgaccatgaacgagcggcgcaagctgggtctgcatggc
cagatcagtgtagccgtcgcgctcgatgccaaaggaaggctgattggtcgaccgacgctg
cggacgcagggcgttccggtggaagaggacaaggcggacttcctggccgaagcggcggat
gatgccgcggacgtgattgccaagggatcgcatgaggaagaggcggtacgtgagcgtatc
cgcctggccgtacgccgcgcggcgacgcgctggaccggcaagaaaccgattgtggacgtg
ttgctcattcgggcctaa
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