Sphingobium xenophagum: CJD35_20210
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Entry
CJD35_20210 CDS
T05146
Name
(GenBank) DUF87 domain-containing protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
shyd
Sphingobium xenophagum
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyd03400
]
CJD35_20210
DNA repair and recombination proteins [BR:
shyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
CJD35_20210
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Gene cluster
GFIT
Motif
Pfam:
DUF87
FtsK_SpoIIIE
AAA_16
AAA_22
Zeta_toxin
AAA_33
Motif
Other DBs
NCBI-ProteinID:
ASY46815
UniProt:
A0A249N009
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Position
p2:complement(146921..148132)
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AA seq
403 aa
AA seq
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MATVVQIDPSADQWSVPIGRHSRGSLMLNLERLLAGRLLIQGSSGAGKSRTLRKIIEEAF
DFTTIVLVDPEGEFGNLAAHIGATSLKGCELTSDGLTAAAARARQHRLSLHVDLTDLDPD
QRIIKAAALFAGLIGAPREYWAHTVLVCIDEGHLLAPHHAGSARDAETRRLGVATLTDLC
ARGRKRGIAPVIATQRLAKLSSSVISELQNFLVGLNVFDRDIARAADLLGFSAKEADALR
KLAPGEFFAMGPAMSPLPVLAHMEETITEHLGATPRLTAAAAVDSEEAEKLLDLSALREV
SNGSRDAALTLKGTRALDAFLLDPSAPHAASIIGALKSIAPNATTANDLAGHIGAPREAV
DNALDMLAAISAVDTMPRGEDRIARLHARLRAKISDIPVVALA
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagtcgtacagatcgacccctccgccgaccaatggtccgtgccgatcggcagg
cacagccgtggctcgctcatgctgaacctcgaacgcctgctcgccgggcggctgctcatc
cagggcagcagcggcgcgggcaagagcagaaccctgcgcaagattatcgaggaggccttc
gatttcacgacaatcgtgctcgtcgatcccgaaggcgaattcggcaatctcgccgcccac
atcggcgcaacctccctaaagggctgcgagctgacctccgatggcctgacggcagccgcg
gcccgcgccaggcagcaccgcctgtcgcttcacgtcgacctcaccgatctcgatcccgac
cagcggatcatcaaggcggcggcgctcttcgccggactgatcggcgcgccgcgcgagtac
tgggcgcataccgtcctggtctgcatcgacgagggccatctgctcgcgccacatcatgcc
ggatcggcccgcgatgccgagacccggcgccttggcgttgccacgctgaccgacctctgt
gcccgcggccgcaagcgcggcatcgccccggtcatcgccacgcagcgcctcgccaagctc
tcatcctcggtgatctcggagctgcagaacttcctcgttggcctcaacgtgttcgatcgc
gacatcgcgcgcgcggccgatctcctcggtttctcggcgaaggaggccgatgccctgcga
aagctcgcgcccggtgagttcttcgcgatgggcccagcgatgtcgccgctgcctgtcctc
gcccatatggaagagacgatcaccgagcatctcggcgcgacgccaaggctcaccgcggcc
gctgcggtcgacagtgaagaagcggagaagctgctcgacctgtcggctctccgcgaggtc
tcgaacggctcgcgcgatgcggctctgacgctcaagggcacccgggcgctcgatgccttc
ctcctcgatccttccgcgccgcacgcggcctcgatcatcggcgcgctcaagagcatcgcg
ccgaacgccacgaccgccaacgatcttgcgggccatatcggtgccccgcgcgaagccgtc
gacaacgccctcgacatgctcgccgccatctccgcggtggacacgatgcctcgaggcgag
gatcgcatcgcccggcttcatgcccgcctccgcgccaagatcagcgacatccccgtggtg
gcgctggcatga
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