Sphingobium xenophagum: CJD35_22150
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Entry
CJD35_22150 CDS
T05146
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd00521
Streptomycin biosynthesis
shyd00523
Polyketide sugar unit biosynthesis
shyd00525
Acarbose and validamycin biosynthesis
shyd00541
Biosynthesis of various nucleotide sugars
shyd01100
Metabolic pathways
shyd01110
Biosynthesis of secondary metabolites
shyd01250
Biosynthesis of nucleotide sugars
Module
shyd_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CJD35_22150 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CJD35_22150 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
CJD35_22150 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CJD35_22150 (rfbB)
00525 Acarbose and validamycin biosynthesis
CJD35_22150 (rfbB)
Enzymes [BR:
shyd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CJD35_22150 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
adh_short
KR
NAD_binding_8
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ASY47168
UniProt:
A0A249N0P6
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All DBs
Position
p5:20461..21516
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AA seq
351 aa
AA seq
DB search
MRVIVTGGAGFIGSALVRYLVLQKGYDVLTIDALTYAGCEASLKEVEGKNSHQFLHANIC
DRAAMDAAITGFQPDRIMHLAAESHVDRSITGAADFIQTNVVGSFTLLEAARAYWNGLEG
AAKDAFRFLHVSTDEVYGSLGDEGLFEETTPYDPSSPYSASKAASDHLAKAWHRTYGMPI
VVSNCSNNYGPYHFPEKLIPLTILNALEGRKLPVYGKGENIRDWLYVDDHARALDIIVEK
GEPGETYNVGGRNERKNIDVVKRICAVLDELRPTDKPRVDLIEYVTDRPGHDARYAIDAT
KLENELGWRAQENFDSGIEKTVRWYLDNEWWWRPLRDAYDGQRLGLEKAKA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtcatcgtcaccggcggcgccggctttatcggctctgccctcgtccgttatctg
gtgctgcaaaagggctatgacgtcctcaccatcgacgcgctgacctatgcgggatgcgaa
gcgtcgctcaaggaagtggaaggcaagaacagccaccagttcctgcacgccaatatctgc
gatcgcgcggcaatggacgcagcgatcaccgggttccagcccgaccgcatcatgcatctc
gccgccgaaagccatgtcgatcgttcgatcaccggtgcggccgatttcatccagaccaat
gtcgtgggcagcttcaccctgctggaggccgcccgcgcctactggaacggcctcgaaggc
gccgcgaaagacgccttccgcttcctccatgtgtcgaccgacgaagtctatggctcgctg
ggcgacgaagggctgttcgaggaaacgacgccctacgatccctcctcgccctattcggcg
tcgaaggctgcgtccgatcacctcgccaaggcgtggcaccgcacctatgggatgccgatc
gtggtgtcgaactgctcgaacaattacgggccgtaccactttcccgaaaagctcattccg
ctcaccatcctcaacgcgctcgaagggcgcaagctgccggtctatggcaagggcgagaat
atccgcgactggctctatgtggacgatcatgcccgcgcgctcgacatcatcgtcgaaaag
ggcgagccgggcgaaacctataatgtcggcggccgcaacgagcgcaagaatatcgatgtg
gtcaagcgcatctgcgcggtactcgacgaactgcgccccacggataagccccgtgtcgat
ctcattgaatatgtgaccgatcgccccggccatgacgcccgctacgcaattgacgcgacc
aagctggagaatgaactgggctggcgcgcgcaggagaatttcgacagcggcatcgaaaag
acggtgcgctggtatctcgacaatgaatggtggtggcgcccgctgcgcgacgcctatgac
ggccagcgcctaggtcttgagaaagcgaaggcgtga
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