Candidatus Sulfidibacterium hydrothermale: LA303_00055
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Entry
LA303_00055 CDS
T07944
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyr03032
]
LA303_00055 (topA)
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_00055 (topA)
Enzymes [BR:
shyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LA303_00055 (topA)
DNA replication proteins [BR:
shyr03032
]
Prokaryotic type
DNA Topoisomerases
LA303_00055 (topA)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LA303_00055 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
UBM62393
LinkDB
All DBs
Position
10670..12997
Genome browser
AA seq
775 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEGFLGKDYTVKSSLGHVMDLDSKKLSVDVEHDFEPQYQISPDK
KKLVSELKKMAKSAETVWLASDEDREGEAISWHLIKALKLDEEKSKRIVFHEITKSAILN
AIENPRGIDHNLVMAQQARRVLDRLVGYELSPLLWRKVKPSLSAGRVQSVAVRLIVEREE
EIKKFKSVSSFRTLAEFRLSDEKDTTVFTAEYAERFKTYEEAKAFIEKQAEAVFQVLSVE
KKPGKKSPAPPFTTSTLQQEASRKLGMSVANTMRVAQRLYESGKITYMRTDSVNLSKQAI
AAAKAEITSRFGEEYVKTRRYTTKSKGAQEAHEAIRPTYLDQQTISGTPEEQRLYELIWK
RTVASQMSDAVLEKTQVKIQSSAAEKNFLATGEVVKFDGFLKVYRPTTDETTEEKQEASL
LPAMTPGDALTLIEMRSTETFTKHPPRYTEASLVRKMEELGIGRPSTYAPTISTIQKREY
VVKESRPGEKRNIRNILLKNGKVEEKITKENTGTEKAKLFPTDIGVLVNRFLQQYFDDII
DYNFTSNVEKEFDEIAEGKKVWNHIIKEFYGPFHEKVQETLKNSGKFSGERLLGKDPKTG
KNVYAKIGRYGAIVQIGDTESDDKPRFAGLQKGQSVETITLEEALKLFEYPRHLGEYEGE
EVTVAIGRFGPYVKHNKLFYSIKKEYNPASLTLEEAIQIIEAKRKAEREKIIKTFPEDPD
VQVLNGRWGPYLVIKKQNYKIPKGTDAASLTLEDCYAIAKDPKNMPKKRYTRKKK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaacctggtaattgttgagtcgcccgccaaggcaaaaaccattgaaggattt
cttggaaaagattacaccgttaaatcaagtctcggacatgtgatggatttggattccaaa
aaactgagtgtggatgtggaacacgattttgaaccgcaataccaaatcagtccggacaag
aaaaaactggtaagtgaattgaaaaagatggccaaatcagccgaaaccgtttggctggct
tccgatgaagaccgggaaggagaggctatttcgtggcatctgatcaaagcattaaaatta
gacgaagagaaaagcaaacgtattgtttttcacgaaattaccaaaagtgccattctgaac
gccattgaaaatccacggggaatcgaccacaatctggtaatggcccaacaagcccgccgg
gtattagaccgcttggtaggttacgaactttcccctttgttgtggcgaaaggtgaaacca
tcactttctgccggtcgtgtgcaatcggtggccgtacgactgattgttgaacgcgaagaa
gaaattaaaaaatttaaatccgtttcgtctttccgcacactggctgagtttcggttgtca
gacgaaaaagatactaccgttttcaccgctgaatatgccgaacgcttcaagacctatgaa
gaagccaaggcatttattgaaaaacaggctgaggcggtttttcaggtactgtccgtagag
aaaaaacccggtaaaaaatcaccggcgccaccttttacaacttctactttacagcaggaa
gcatcaagaaaactgggaatgtcggtggccaacaccatgcgggtagcccaacggctgtac
gagtcagggaaaattacctatatgcgtaccgactccgttaacctgtcgaaacaggctatt
gctgccgccaaagcagaaattacttcccgttttggagaagaatatgtaaaaacacgccgt
tatactaccaaaagcaaaggcgcccaggaagcacacgaagccatccggcctacttatctg
gaccagcaaaccatcagcggcacaccggaagaacaacgtctgtatgagttgatatggaaa
cgcacagtggcttcgcaaatgagcgatgccgtcctggaaaaaacccaggtaaaaattcaa
tcttcggcagccgaaaaaaactttttggctaccggcgaagtagtaaagtttgacggattt
ctgaaggtctatcgtcccacaacggatgaaactaccgaagaaaaacaggaagcatcgttg
cttccggccatgactccgggtgatgcgctgacactcatcgagatgcgttccacagaaaca
tttaccaaacatccgccccgctatacagaagccagtcttgtccgtaaaatggaagagctg
ggtattggtcggccttctacttatgcccctaccatttccaccatccaaaaacgggaatat
gtagtaaaagaaagccgtccgggcgaaaaacgaaacatccggaatattctgctgaaaaac
ggcaaagtagaagaaaagattaccaaagaaaataccggaaccgaaaaagccaaacttttt
ccaacagacattggcgtattggtaaaccgctttttacaacagtatttcgatgatattatc
gactacaatttcacttctaatgtagaaaaagagttcgatgaaattgccgaaggaaaaaaa
gtgtggaaccacattatcaaagaattttacggaccatttcacgaaaaagtacaagaaacg
ctgaaaaactcagggaagtttagcggagaaaggctgcttgggaaagatcctaaaaccgga
aaaaacgtttatgccaagatcgggcgctacggtgcaattgtgcaaattggggataccgaa
tcggatgataaaccccgttttgccggattacaaaaaggacaaagcgtagaaaccattacg
ctggaagaagcgctcaaactatttgaatacccgcgccatctcggagagtatgaaggcgaa
gaagttaccgtggcaatcggtcgttttggtccttatgttaaacacaacaaacttttttat
tccattaaaaaagaatacaacccggcttcgctcaccctggaagaagccattcagattatc
gaagccaaacgaaaagccgaacgggaaaaaataataaaaactttccccgaagatccggat
gttcaggtactcaatggccggtggggaccttaccttgtcatcaaaaaacaaaactataaa
attccgaagggtactgatgccgcatcgctcactctcgaagattgttacgctattgccaaa
gacccgaaaaacatgccgaaaaaacggtatacccgaaagaaaaaatag
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