Candidatus Sulfidibacterium hydrothermale: LA303_01020
Help
Entry
LA303_01020 CDS
T07944
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03030
DNA replication
shyr03410
Base excision repair
shyr03420
Nucleotide excision repair
shyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA303_01020 (polA)
03410 Base excision repair
LA303_01020 (polA)
03420 Nucleotide excision repair
LA303_01020 (polA)
03440 Homologous recombination
LA303_01020 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyr03032
]
LA303_01020 (polA)
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_01020 (polA)
Enzymes [BR:
shyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LA303_01020 (polA)
DNA replication proteins [BR:
shyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LA303_01020 (polA)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LA303_01020 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA303_01020 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
RNase_H_2
HHH_5
DUF3913
DNA_pol_lambd_f
DUF1198
HHH
Nop
Motif
Other DBs
NCBI-ProteinID:
UBM62575
LinkDB
All DBs
Position
258014..260773
Genome browser
AA seq
919 aa
AA seq
DB search
MENEKKLFLLDAMALIYRAYFAMSRNPQINSKGLNTSAILGFANTLLEILKHENPTHIGV
AFDTMAPTQRHEDFAEYKANREKMPEDLAAAIPYVKELLDALNIPVLLLDGYEADDIIGT
LAKKAEKKGFITYMMTPDKDFGQLVSDKIFMYKPSRNGKPAEIWGPKEVCERYGIERPEQ
FIDILGLWGDAVDNIPGVPGIGEKTAAKLIAQFGSIENLLKNTHQLKGKLRENLEKYADQ
ALQSKQLATILTDVPLPFEPEKLKMGAPDHEALKKLFEELEFRTFAKRFFTWLSLQQPQG
NYEQGELFPVSEEVEIKTIHTTPHTYHLIDTPEKARMLAGELKKQKAFCFDTETTGLDPD
KAEIVGISFSWKAHEAYYVPLSDNYHRATQQLAVFKEVLENEKIEKTGQNIKFDISILRW
YDIVVKGPLFDTMIAHYLLEPDRRHNMDYLAETYLNYKPVSIESLIGKKGKKQGSMRDVP
LEEIKEYAAEDADITWQLRKVLEPKLKETGTEKLFFETEMPLVPVLASMEAEGVKLDTET
LARFSEELTIEIALMEKEIYEMAGMEFNIASPKQLGEVLFDRLQLSGKPKKTKTGQYSTS
EDVLTKLAYRHPIAEKILEYRSLTKLKSTYVDALPKLVSQRDGRIHTSYNQAVAATGRLS
SNNPNLQNIPIRTERGREIRKAFVPRNKEYILLAADYSQIELRIIAHLSRDEGMMEAFRK
GLDIHTATAARVYGVPVDQVTREMRRHAKTVNFGIIYGISAFGLSERLKIPRREAAEIIK
NYFEKYPGIRQYMDNTIAFAREHGYVETILGRRRYLKDINSANSVVRSYAERNAINAPVQ
GSSADMIKIAMIRIFDEMQKKQMKSKMILQVHDELVFDAHKEEVEMLKQLVEDKMKNALP
LDVPVIVDINTGNNWLEAH
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaaaaaaactgtttctgctggatgccatggcattgatttatcgggcttat
tttgccatgagccgcaatccgcaaattaactctaaaggattgaacacttcagcgattctg
ggttttgccaatacgttgctggagattttaaaacatgaaaatcccacccatatcggcgtg
gcttttgataccatggcgcctacacaacggcacgaagactttgccgaatacaaagccaat
cgcgagaaaatgcccgaagacctggccgcggccattccttatgtgaaagaactcctggat
gccctgaacattccggtattgttgctcgatggttacgaagctgatgatattatcggaaca
ctggccaaaaaagcggagaaaaaaggttttatcacttatatgatgactcccgataaagat
ttcggacaattggtatcagataaaatctttatgtataaaccttcacgtaatgggaaaccg
gccgaaatatgggggccgaaagaagtttgtgagcggtacggaatagaacgtcccgaacag
ttcattgatattcttggattgtggggcgatgcggtggataatattcccggtgtaccgggc
attggcgaaaaaacggctgccaaactcattgcacagttcggttccattgaaaacctgctg
aaaaacacacatcaactcaaaggaaaactacgcgaaaacctggaaaagtatgccgaccag
gcactgcagtccaaacaactggccactatccttaccgatgtaccgttgccttttgagccg
gaaaaactcaaaatgggggctccggatcacgaagcactcaaaaaactttttgaagaactg
gaattccgcacatttgccaaacgcttttttacctggctatctttgcaacaacctcaggga
aattatgagcaaggagagctttttcccgtttctgaagaagtcgaaatcaaaacgatccac
acaacaccgcatacttatcatttaattgatacccccgaaaaagcccggatgctggccggt
gaactgaaaaaacaaaaagccttttgttttgacaccgaaaccacaggcttggatcccgac
aaagccgaaattgtgggtatttccttttcgtggaaagcacacgaagcctactatgtaccg
ttatccgataattatcaccgggctacacagcaattggcggtttttaaagaggtgcttgaa
aacgaaaagattgaaaaaacaggacaaaacatcaagtttgacatttctattttacgttgg
tatgatattgtggtaaagggaccgcttttcgataccatgattgcccattatctgctggaa
cccgaccgtcggcataatatggattatctggctgaaacctacctgaattacaaaccggtt
tccattgagagcctgattgggaaaaaggggaaaaagcaaggcagcatgcgtgatgttccg
ttggaagaaattaaagaatatgccgctgaagatgccgatattacctggcagcttcgtaaa
gttttggaaccgaaattgaaagaaaccggaaccgaaaagttgttttttgaaaccgaaatg
ccgctggtgcccgtgctggcatccatggaagccgaaggcgtgaaactggatacagaaacg
ctcgcccggtttagtgaagaactgaccattgaaattgctttgatggaaaaagagatttat
gaaatggccggtatggaatttaatattgcatcgcccaaacaactgggcgaagtgcttttt
gaccggcttcagctttccggaaagccgaaaaaaaccaaaaccggtcagtattccaccagc
gaagatgtgcttaccaaattggcttatcgacatcccattgcggaaaaaatattggaatac
cgttcgctgaccaagctcaaatcgacttatgtggatgctttgcccaagctggtatcccag
cgcgatggccgcatacatacttcgtacaaccaggcagtagctgctacgggacggctgagt
tcgaacaatcctaatttgcagaatattcctatccgtaccgaacgtgggcgggagatccgc
aaagcatttgtaccgcggaacaaagaatatattttactggccgccgattattcacaaatc
gaattgcgtatcattgctcatttgagtcgtgatgagggcatgatggaggcttttcgtaaa
gggttggatattcataccgccacggctgcacgggtgtatggtgtgccggtagatcaggtt
acccgcgagatgcggcgtcatgccaaaacagtgaattttggtattatttatggcatctcg
gcctttggtctttccgaacggttgaaaattccgcgccgcgaagcggccgaaataatcaaa
aattatttcgagaagtatcccggcatccggcaatatatggataataccattgcttttgcc
cgtgaacatggctatgtagaaaccatccttggccgtcgccgttacctcaaagacatcaat
tcagccaatagcgtagtacggtcttatgccgaacgaaatgctattaatgcccctgttcag
ggttcttcggctgatatgatcaagatcgccatgattcgtatcttcgatgaaatgcagaaa
aaacagatgaagtcgaaaatgattctgcaagtacatgacgaactggtttttgatgcccat
aaagaagaagtggaaatgcttaaacagctggtggaagacaaaatgaaaaatgccttgccg
ctggatgttccggttatcgtggatattaacaccggaaacaattggcttgaagcacattag
DBGET
integrated database retrieval system
