Candidatus Sulfidibacterium hydrothermale: LA303_01930
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Entry
LA303_01930 CDS
T07944
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA303_01930 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shyr03019
]
LA303_01930 (recQ)
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_01930 (recQ)
Enzymes [BR:
shyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA303_01930 (recQ)
Messenger RNA biogenesis [BR:
shyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA303_01930 (recQ)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LA303_01930 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
Helicase_Sgs1
TarS_C1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UBM62752
LinkDB
All DBs
Position
complement(507836..510043)
Genome browser
AA seq
735 aa
AA seq
DB search
MESANRDVYGLRPLLKSFFGFSSFKGNQEKIINNLMEGNDGFVVMPTGGGKSLCYQLPAL
VKPGTAIVVSPLIALMKNQVDMVRNFGSENGIAHVMNSSLSKTEMNQVRSDLLSGKTKLL
YMAPESLTKEDNIEFLKQIKISFYAIDEAHCISEWGHDFRPEYRKLRPIIQAIGQDVPII
ALTATATLKVQEDILKTLNIPNAKVFKSSFDRPNLYYEVRPKTKDVIKDIIKYIKTQPGK
SGIVYCLSRKKVVEIAETLVVNGIKAVPYHAGLDAATRRNNQDKFLMEEVDVIVATIAFG
MGIDKPDIRFVIHHDIPKSIEGYYQETGRAGRDGGEGNCITFYSYDDIQKLEKFMKDKPV
AEQEIAKELLFETVAYAESSVCRHKLLLHYFGEEYNKDNCGACDNCLHPKEKFEGKEDIK
KVLETVKELKQQYKVKMIADILAGKKTGDIKAIKLDKNPIFGSGKEKDSRYWVMVIRQAL
IQRLLEKEIENYGILKLTKSGEEFIKQPYSIMIAKNHNYENENDENVVVPGKGQKLSGSD
PVLFAMLKDLRKEISQRENLPPFVIFQDPSLEDMAIQYPITINEMQQIVGVGVGKAKKYG
QPFCDLIKQYVEENDIMRPNDIVVKSVVNKSGLKVYIIKSIDRKLPLEDVAHAKNLTMDE
LLTEIERIVASGTRLDISYYIDEHIDEYHQEDIYDYFLEAETDSVEDALQELGEAEYSEE
EIRLMRIKFMSEVGN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgcaaatcgtgatgtatatgggctgcgaccattactcaaaagctttttcgga
ttctccagttttaaaggaaatcaggaaaaaatcatcaataatttgatggaaggaaacgac
ggctttgtggtgatgcctaccggcggagggaagtcgttgtgctatcagcttccggcactg
gtaaaacccggaaccgccattgtggtttctcctttgattgccctgatgaaaaatcaggtg
gacatggtacgcaattttggctccgaaaacggtattgctcacgtcatgaactcctcgctt
tccaaaaccgaaatgaaccaggttcgttcggatttgctttcgggtaaaaccaagttgctt
tatatggcgccggagtcgttgacaaaagaggataacatcgaatttttaaaacagattaaa
atctctttttatgccattgacgaagcccactgtatttcggaatgggggcatgatttccgg
ccggaataccgtaaactgaggccgatcattcaggctatcggccaggatgtacccattatt
gccttaaccgctactgccaccttaaaagtacaggaagacatcctgaaaacgctcaatatt
cccaatgccaaagtttttaaatcgtctttcgacagacccaatttatactacgaggtccgg
cccaaaaccaaagatgttatcaaagacatcatcaaatacatcaaaacccaacccgggaaa
tcgggaattgtgtattgcttaagccggaaaaaagtagtagagatagccgaaacactggtg
gtcaacggaataaaagccgtgccttaccatgccggactggatgctgctacccgcagaaac
aaccaggataaattcctgatggaagaagtggatgtaattgtggctaccattgcttttggc
atgggaattgataaacccgacatccggtttgtcattcatcatgacatacccaaaagtatt
gaagggtattatcaggaaaccggtcgggcaggccgcgacggcggcgaaggaaactgtatc
actttttacagctacgatgatattcagaagctggaaaagtttatgaaggataaaccggtt
gccgaacaggaaattgccaaagaactgctgtttgaaacagtggcttatgccgaatcgtcg
gtatgccggcataaactgcttctgcactattttggcgaagaatacaacaaagataattgc
ggcgcttgcgacaattgtctgcatccgaaggagaaatttgaggggaaagaggacatcaaa
aaagtgctggagaccgttaaagaactgaaacagcagtacaaagtaaagatgattgctgat
attttggccgggaaaaaaacaggcgatataaaagccatcaaactggataaaaatcctatt
tttggcagcggaaaagagaaagacagccgctattgggtaatggttatccggcaagccctt
atacagcggttgctggaaaaagaaattgaaaattacggtattttaaagcttacaaaatca
ggtgaagaatttattaaacaaccctacagtattatgattgcgaaaaaccataattacgag
aacgaaaacgacgagaacgttgtcgttccggggaaaggacagaaactgagtggttctgat
ccggtattgtttgccatgttgaaagatttgcgaaaagagatatcgcaacgcgaaaacctg
cctccttttgttattttccaagatccttcactggaagatatggccattcaatatccgatt
accatcaatgaaatgcagcaaattgtgggagtaggtgttggaaaagccaaaaaatacggt
cagccgttttgtgacctgatcaaacaatacgtagaagaaaacgacattatgcgccccaac
gacatcgtggtgaagtcggtcgtcaataaatcggggttgaaagtgtatattatcaaaagc
attgaccgcaaattgcccttagaagacgttgcccatgccaaaaacctgaccatggacgag
cttctgacagaaatagaacgaattgttgcttccggaacccggttagatatcagttattat
attgatgagcacatcgacgaataccatcaggaagatatttacgactactttttggaggca
gagaccgattcggtggaagatgccttgcaggaactgggtgaggcggaatacagcgaagaa
gaaatccgcttaatgcgtattaagttcatgtcggaagtgggaaactaa
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