Candidatus Sulfidibacterium hydrothermale: LA303_04035
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Entry
LA303_04035 CDS
T07944
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03030
DNA replication
shyr03430
Mismatch repair
shyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA303_04035
03430 Mismatch repair
LA303_04035
03440 Homologous recombination
LA303_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyr03032
]
LA303_04035
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_04035
Enzymes [BR:
shyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LA303_04035
DNA replication proteins [BR:
shyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LA303_04035
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LA303_04035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Rv2179c-like
PTCB-BRCT
DNA_pol_A_exo1
DUF4209
Motif
Other DBs
NCBI-ProteinID:
UBM63150
LinkDB
All DBs
Position
1033217..1034038
Genome browser
AA seq
273 aa
AA seq
DB search
MEIPDFTAIDFETATGARNSACAVGIVRFEDGKAIIKRHYYIQPPDNKYSYRNIMVHGIY
AKTTINEPTFDIVWEEIKPFLENQIVVAHNASFDRSVLEESLKLYDIISLEILWLCTFEL
TGMNLENACELYDVELLNHHNALDDALACGNLFVKLLSGYKPKGYEYIRHEKRESFHEKI
SKEFYKPDLESCDQDSVFYNKHIVISGVFKSCSRNEMAKKLHESGAFIQTNVNHKTDFVL
AGANMGPAKKQKAESLGIPIISEEDFEKMIEPE
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggaaatacctgattttacagcgattgattttgaaactgctacaggagcaagaaatagt
gcatgtgctgttggcatagtaaggtttgaggatggtaaagccattattaaaagacattat
tacattcaacctcctgataataagtacagttataggaatattatggttcatggaatttat
gctaaaacaacaattaatgaacctacatttgatattgtttgggaagaaatcaaaccattt
ttggaaaatcaaatagttgtagctcataatgcttcttttgaccgttccgttttggaggaa
tctttaaaactgtatgatatcatttcgctagaaattttgtggttatgtacatttgaattg
actggtatgaatcttgaaaatgcatgtgagttgtatgatgtagaattattgaatcatcat
aatgcacttgatgatgcattagcctgtgggaatctttttgtaaaattattaagtggttat
aaacctaaaggttatgaatatatacgccatgaaaaaagagaatcctttcatgaaaaaatt
tctaaagaattttacaagccagatctagaatcatgcgatcaggatagtgtgttttataac
aaacatattgttatatccggtgtttttaagagttgttctcgtaatgaaatggcgaaaaaa
cttcatgaaagtggggcttttattcagacaaacgttaatcacaaaaccgattttgttctg
gccggagccaatatgggaccggctaaaaagcaaaaggcagaaagtcttgggattccgata
atctcggaagaggattttgaaaagatgattgaaccggaatga
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