Candidatus Sulfidibacterium hydrothermale: LA303_04245
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Entry
LA303_04245 CDS
T07944
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LA303_04245 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_04245 (uvrA)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA303_04245 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LA303_04245 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_22
AAA_15
AAA_14
nSTAND3
AAA_23
ATPase
AAA_18
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UBM63188
LinkDB
All DBs
Position
complement(1081106..1083961)
Genome browser
AA seq
951 aa
AA seq
DB search
MDTEKENAGKNFLKIRGARVHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQR
RYMETFSAYARQFIGHLERPDVDQINGLSPVISIEQKSVNRNPRSTVGTITEIYDFLRLL
YARASEAFSYNTGEKMVQYNENQIVDLIIKDYTGKNISVLAPLIRSRKGHYRELFERIRQ
QGFLRIRVDGEIREISPGMQLDRYKTHDIEVVIDRLPVEKKMKNRLSKTVETALKHGNGV
LMVWDESSEQGRFFSRKMMCPTTGIAYDDPEPNLFSFNSPHGACPRCNGLGTIKEVDLEK
VFPDKKLSIRKGGIAPLGEYKSTWIFNQLETIGIKYGFTLDTPIQDISDKAMDIILHGSH
ETVEIKKEYLGITSSYSLTYEGLLSYLENSHTESASRSSQKWAARYMNTQICPECQGARL
KKEALYFKIDGKNISELARMDLTELKNWLNGLEDRLNERQRRIAREILREIRVRLNFLLE
VGIGYVNLNRPAASLSGGESQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNHRLIASLK
DLRDIGNSVIVVEHDKDTILSADHILEIGPGAGRLGGEIVAQGTPTEILKKNTLTSLYLK
GEKQIPFSTNRRPGNGKTIVLQGARGNNLKNVTARFPLGKFICVTGVSGSGKSTLVNETL
YPILNAHFFHALKEPLPYDTIEGLENIDKVIQIDQSPIGRTPRSNPATYTKVFDEIRKLY
GQLPEAKIRGYKPGRFSFNVKGGRCETCKGAGVRVIEMNFLPDVYVLCEDCQGKRYNRET
LEVRYKGKSINDVLNMTIRQAAEFFTHIPAIAHKLQTLKDVGLGYLTLGQSSTTISGGEA
QRVKLATELSKKDTGKTLYILDEPTTGLHFEDVKVLLDVLNKLVDKGNTVIVIEHNMEVI
KVADHIIDLGPEGGNRGGVIIVEGTPEEITQNTKRLTAHYLKKELETPFHP
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggatacagaaaaagaaaatgcgggcaagaatttcctgaaaatcaggggagccagggtt
cataatctgaaaaatattgatgtagatattccgcgagaccagttggtagtcatcaccggt
ctaagcggaagcggcaaatcatctttggctttcgacaccatttacgcggaaggacaacgg
cgttatatggaaactttttcggcttatgcccgccaatttattggtcatctggagcgccct
gatgtggaccagatcaacggattaagtccggtgatttccattgaacaaaaatcggttaac
cggaatccgcgttccacggtgggaaccattacagaaatttatgatttcttacggctactt
tatgcccgtgcttccgaagctttttcgtacaacacgggcgaaaaaatggtacaatacaac
gaaaatcagattgttgatctgatcataaaagattataccggaaaaaatatttctgttctg
gccccgttgattcgcagccggaaaggacactaccgtgaactctttgaacgtatccggcaa
caaggatttttacgtatccgggtagatggggagatcagggaaatcagtccgggaatgcaa
ctggaccggtataaaacccacgacattgaggtagtcattgaccgcttgccggttgagaaa
aagatgaaaaaccggttgtcaaaaaccgtggaaacggcattaaaacacggaaacggcgtt
ttgatggtttgggatgaatcgtctgaacagggacgttttttcagccggaagatgatgtgt
ccgaccaccggaattgcttatgacgaccctgagcccaaccttttttcgttcaattcacca
cacggtgcctgcccgcggtgcaacggactgggaaccatcaaagaagtggatctggagaaa
gtttttccggataaaaaactttccattcgcaaaggcggaattgctcctttgggcgaatac
aaaagcacctggatatttaatcagctggaaaccatcggcatcaagtatggctttaccttg
gacacccctattcaggacatttccgacaaagccatggatattattttacacggctctcac
gaaacggtggaaataaaaaaagaatatctcggtattacttcttcttattcactcacctat
gaaggattgttaagctatcttgaaaattcacataccgaaagtgcttcacgctcttcgcaa
aaatgggctgcccggtatatgaacacacaaatttgtccggaatgtcagggagcccggtta
aaaaaagaagccctttattttaaaattgacggaaaaaatatttccgagttggcccgtatg
gatttaaccgaactaaaaaactggttaaacggactggaagaccggctgaacgaacggcaa
cgccgtatcgcccgcgaaattttaagagaaatacgggtccggctcaatttcttactggaa
gtagggattggttatgtgaatttaaaccggccggcagcttctttatccggaggcgaatca
caacggatccggctggctacacagattggttcgcgacttaccggcgtgttatacattctg
gacgaacccagtatcggactgcatcaacgcgacaaccacaggctgattgcttcgctaaaa
gacctgcgggacatcggcaacagtgttattgtggtggaacacgataaagacactatttta
tcggcagaccacattcttgagattggcccgggagccggcagactgggaggtgaaattgta
gcccagggaacacctaccgaaatcctgaaaaaaaataccctgaccagcctttacctgaaa
ggagaaaagcagattcccttctcaacaaaccggcggcccggcaatggaaaaacaatcgtt
ctgcagggagcccgggggaataatctgaaaaacgtaacggcacgctttcctttgggtaag
ttcatttgtgttaccggagtttccggaagtggaaaatcaactttggtcaacgaaacatta
tatcccattcttaatgcccatttttttcatgcattaaaagagccgctaccctacgacacc
atcgaagggctggaaaatattgacaaagtcattcaaattgaccagtcacccataggacgt
actccccgctccaatccggccacttacaccaaagtatttgacgaaatccggaaactttac
ggacaactccccgaagccaaaatccgcggatacaaacccggacggttttcatttaacgtt
aaaggaggccggtgtgaaacctgcaaaggagctggtgttcgcgttatcgaaatgaacttt
ctgccggatgtgtatgttttgtgcgaagattgtcagggtaaacgttataatcgtgagaca
ctggaagttcggtataaaggaaaatccatcaatgatgtgctgaacatgaccattcgtcag
gctgcagaatttttcacccatattccggctattgcccacaaattgcaaacgctgaaagat
gtcggtttaggctacctgacattgggacaatcttctacaaccatttcaggcggagaagcc
cagcgggtaaaactggctaccgaactctccaaaaaagataccggcaaaacactttacatc
cttgacgaaccgaccaccggtcttcactttgaagatgtgaaagtattgctggatgtcctg
aacaagctggtggataaaggaaataccgtgatcgtgattgaacacaacatggaagtaata
aaagtggctgaccatattattgatttgggaccagaaggcggaaaccggggaggagtaatc
attgtggaaggaacaccggaagaaattactcaaaatacgaaaagactgacggcccattat
ctaaaaaaagagttggaaaccccttttcatccttaa
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