Candidatus Sulfidibacterium hydrothermale: LA303_04615
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Entry
LA303_04615 CDS
T07944
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03420
Nucleotide excision repair
shyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LA303_04615
03430 Mismatch repair
LA303_04615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_04615
Enzymes [BR:
shyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA303_04615
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA303_04615
MMR (mismatch excision repair)
Other MMR factors
LA303_04615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
AAA_12
AAA_11
ResIII
NFACT-C
DUF7776
Motif
Other DBs
NCBI-ProteinID:
UBM63257
LinkDB
All DBs
Position
complement(1180214..1182499)
Genome browser
AA seq
761 aa
AA seq
DB search
MKDFLKDLNKEQYDAMVHTDGPSMVIAGAGSGKTRVLTYRIAHLLSKGVDPFHVLALTFT
NKAAREMKERIIQLIGDGEARNVWMGTFHSVFAKILRLDGHHLGYPSHFTIYDTDDSKKL
IRTIIGEMNLDPKVYAPNFVRNRISMAKSHLINPKLYAEDPEIQSADESMAKPLVKEIYA
AYQARLKRSDAMDFDDLLFNTYILFRDFPEVLFKYQKKFQYILVDEYQDTNHAQYLIVKK
LAAKYENICVVGDDAQSIYAFRGANIQNILNFRKDYPDYKLFKLEQNYRSTKTIVKAANK
VITHNKEQIKKTVWTENEDGEKIGFIKAVSDNEEGKLVADAIFSTKMNHQLANSDFAILY
RTNAQSRAMEESLRKLNIPYRIYGGQSFYNRKEIKDLLAYFRVVINPNDEEALQRAISTP
SRGIGKTTMQRIIVAADEHGVSMWEIISNPQKYDIKINSGIANKLNGFTTMIKSFAAEVK
KKDAYEAASTIANQSGLLKMLKDEDTPEADNRIENIEELLNSVKEFSERGAEAHEGDLES
QGTLEEFMQEVALFTDADKEDDDNDKVALMTIHAAKGLEFPYVFIVGLEENLFPAVQSVS
TRAELEEERRLFYVALTRAMKKVTLSYAESRYRWGQFSFSEPSRFLEEIDESLLDIPHKS
HIPAPQPASNDFRQKNTGYRPVKRKLKPVQTATSGRKTESRHEEDDMSGLMAGMEVEHAK
FGKGKVISVEGSGPNKKATVFFNGVGNKNLLLRFARLKILK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagattttttaaaagatttaaacaaagaacaatacgatgccatggtgcacaccgac
ggcccctccatggtcatcgccggtgccggttccggaaaaacaagagtgcttacttatcgc
attgcccacctgttgtcaaaaggcgtcgacccgtttcatgtactggccctgacttttacc
aacaaagccgcccgtgagatgaaagaacgtatcattcagctgattggcgatggggaagcc
cggaatgtctggatgggaacattccactcggtttttgcaaaaattttgcgactggacggg
catcacctggggtatccgtcacattttaccatttatgataccgacgacagcaaaaaactc
atccgaaccattattggcgaaatgaatctcgatcccaaagtttatgctcccaattttgtc
cgtaaccggatctccatggccaaatcacacctgatcaacccaaaactttatgctgaagat
ccggaaatccaaagtgccgacgaaagcatggccaaaccattggttaaagaaatttatgcc
gcttaccaggcccggctgaaacgatcagatgccatggatttcgatgatttgctttttaac
acctacattctttttcgtgactttccggaagtacttttcaaataccagaaaaaattccag
tacatcctggtggatgagtatcaggataccaaccatgcacaatatctcattgtaaaaaag
ctggcggccaaatacgaaaacatttgtgtggtaggcgatgatgcacaaagtatttatgcc
ttccgcggcgctaatatccagaacatcctgaacttccggaaagactatcccgattataag
ctctttaagctggaacaaaactaccgttctaccaaaacaatcgtaaaagcagccaacaaa
gtcattacccacaacaaagagcaaatcaaaaaaacggtttggaccgaaaacgaagacgga
gagaaaattggtttcatcaaagcggtaagcgataacgaagaaggaaagctggtggccgat
gccattttttccacaaaaatgaaccatcagctggccaacagcgactttgccattttatac
cgcaccaatgcccagtcgcgggccatggaagaatcgttgcgcaaactgaacattccatac
cggatttatggggggcagtcgttttataaccgtaaagaaatcaaagacctgctcgcctat
tttcgggttgtgattaaccccaacgatgaagaagccctgcagcgggccatcagtactcct
tcgcgcggaatcgggaaaaccaccatgcagcgcattattgtagctgccgacgaacacggt
gtaagcatgtgggaaatcatcagcaatcctcaaaaatatgatataaagatcaattccggc
atcgccaacaaactcaacggctttacgaccatgatcaaaagttttgccgctgaagtaaaa
aagaaagatgcttacgaagctgccagtactattgccaaccaatcgggactgctaaaaatg
ttaaaagatgaagacacgcccgaagccgacaaccgcattgaaaacattgaagagctgctg
aacagcgtaaaagaattcagtgaaagaggcgctgaagcccacgaaggagatctggaatcg
cagggaacactggaagaatttatgcaggaagttgccctgtttaccgatgccgataaagaa
gatgacgataatgacaaagtagcactaatgaccattcatgctgccaaagggctggaattt
ccttacgtgtttattgtcggattggaagagaatctctttccggctgtacagtcagtcagc
acccgcgccgaactggaggaagaacgccggttgttttacgtagcactgacccgggccatg
aaaaaagtaaccctttcgtatgccgaaagccgctatcgctggggacagttttctttttcg
gaacccagccgttttttagaagaaattgacgaaagtctgttagacattccccacaaaagc
cacattccggcgccacaaccggcatcaaatgacttccggcagaaaaatacaggttaccgc
ccggtaaaaagaaaactcaagccggtacaaacggcaacttccggcagaaaaaccgaaagc
cggcatgaagaagatgacatgagcggactcatggccggcatggaagtggaacatgccaaa
ttcggcaaggggaaagtgatttcggtggaaggaagcggaccgaacaaaaaagccaccgta
ttttttaacggggtcggaaacaaaaacctgctcctgcgttttgcccgtctaaagattttg
aaataa
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