Candidatus Sulfidibacterium hydrothermale: LA303_04980
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Entry
LA303_04980 CDS
T07944
Name
(GenBank) bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr00300
Lysine biosynthesis
shyr00470
D-Amino acid metabolism
shyr00550
Peptidoglycan biosynthesis
shyr01100
Metabolic pathways
shyr01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LA303_04980
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LA303_04980
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LA303_04980
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
LA303_04980
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
shyr01011
]
LA303_04980
Enzymes [BR:
shyr01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
LA303_04980
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
LA303_04980
Peptidoglycan biosynthesis and degradation proteins [BR:
shyr01011
]
Precursor biosynthesis
Amino acid ligase
LA303_04980
Racemase
LA303_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
UBM63329
LinkDB
All DBs
Position
complement(1285497..1287989)
Genome browser
AA seq
830 aa
AA seq
DB search
MTHPKYDGHELADILKAKLFSPDADKIVVEDILIDSRKFIRASKTLFFALKGTRNDGHRY
LRDLYRKGIRYFVISNEKIDRKAFPKASFFLVQDTLKALQQLAAHHRSRYQIPVIGITGS
NGKTIVKEWLFQLMSKDKKIVRSPKSYNSQIGVPLSVWQMNDSHELAVFEAGISRPDEME
HLQAIIQPTLGIFTNIGEAHNEGFIGLSQKIGEKLKLFTRVDTLIYNNDQKELLETFIRT
GILENIGTFSWGADQNSNLQITNKTVKENATEITGIYQDREISVEIPFADKASVENAIHC
WAAMLCLGYDQQTIRQRMAALTPIAMRLEQREGINNCTIINDAYNSDINSLTIALEFMEQ
QNQHREKTVILSDILQSGRSEAELYGNVAELLQQKGVSHIIGIGEAISRHAGLFPMKKDF
FRTTQDFIAGFPMASFRNQTILLKGARIFEFERINRLLQQKVHETVLEINLSALTENLNF
FRAKLKPETKVMAMVKAFSYGSGSFEIANILQFHQVDYLAVAYTDEGVELRNAGISLPIM
VMNPEEYAFDLMMKHQLEPEIFSFRSLRMLEKAIRRNQLPQNKPAKIHLKLETGMHRLGF
NEDELDELITRINSNPLIYVQSVFSHLAGADNPALDDFTHGQIQQFQRMAEKLKKAFPYP
VSLHLLNSAGIIRFPEAQFDMVRLGIGLYGVSSLPEISGKLHNVTSLRTEITQIKEIKAG
DSVGYNRRFIAKKPHRIATVSVGYADGLFRSLGNGNITFYIHGQPAPVVGDICMDMCMID
VTGMEVREGDPVMIFYTDHPVSELAQAAGTIPYEVLSRISRRVKRVYYHE
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgacacacccaaaatatgacggccatgagctggcagacatcttaaaagccaaactcttt
tcgcccgatgccgataaaatcgtggtggaagatattcttatcgacagccggaaatttatc
cgggcaagcaaaaccctgttctttgctttaaaaggcacccgaaacgacggccaccgctat
cttcgcgatttatatcgcaagggcatccggtattttgttatttcaaacgaaaaaatcgac
cggaaagctttcccgaaagcatcttttttcttggtacaagatacattaaaagctttacag
cagctggcggcacaccatcgcagccgttaccagataccagttatcggcatcaccggaagt
aacggaaaaaccattgtaaaagaatggctttttcagttaatgagcaaagacaaaaaaatc
gtacgcagccccaaaagttacaattctcaaatcggcgttcccctttctgtatggcagatg
aacgacagccacgaactggctgtttttgaagccggcatctcacggcctgacgaaatggaa
cacctgcaggcaattatccagcctaccctgggcatctttaccaacatcggcgaagcccat
aacgaaggttttatcgggctttcccaaaaaattggcgaaaagctgaaactctttacccgc
gtggatacgctgatttacaataatgaccaaaaagagctgttggaaacttttatccgcacc
ggaattttggaaaatatcggcacattctcatggggagccgaccaaaacagcaatctgcaa
attacaaacaaaaccgtaaaagaaaatgctacagaaataacaggaatttaccaagaccgg
gaaatctcggtggaaattccttttgccgacaaggcttctgtggaaaatgccattcactgc
tgggctgccatgctgtgcctcggatacgatcaacagacaatccggcaacgcatggctgca
ctgacacctattgccatgcggctggaacagcgcgaaggcattaacaactgcaccatcatt
aacgacgcctataactccgacatcaattcgctcaccatcgcgctggagtttatggagcaa
caaaaccaacaccgagaaaaaacggttattctttccgatatccttcaaagtggccgaagc
gaagccgaactttatggcaatgtagccgaactgcttcagcaaaaaggggtctcgcacatt
attggcatcggcgaagccatctcgcgtcacgccggactttttcctatgaaaaaggatttt
ttccggacaacacaggattttattgccggttttccgatggcttcctttcgtaaccaaacc
attttattaaaaggagcccgtatcttcgaatttgaacgaatcaaccggttgctccagcaa
aaggtccacgaaaccgttcttgagatcaatctcagtgccctcaccgaaaatctcaatttt
ttccgtgctaaactcaagccggaaaccaaagtcatggcaatggtcaaagctttttcctat
ggcagcggaagttttgaaatcgccaacattttacaatttcatcaggtagactaccttgcc
gtagcttataccgatgaaggggtggaattgcgtaatgccggaatcagtcttcccatcatg
gtcatgaatccggaagaatacgctttcgatctgatgatgaaacaccagttagagcccgag
atctttagtttccgtagtttgcgtatgctggaaaaggccatccggcggaatcagttacca
caaaacaaaccggcaaaaatccacctgaaactcgaaaccggcatgcatcgccttggattt
aatgaagacgaactggatgaactcatcacacggattaacagcaatccgttgatttatgtt
cagtcggtgttctctcaccttgccggggcagacaatccggctttggatgactttacccac
ggacaaattcaacagtttcagcgtatggctgaaaaactaaaaaaagcttttccatacccg
gtttctttgcatctgctgaattcggcaggaattatccgttttccggaagcacaatttgac
atggtacgccttggcattggtctgtatggcgtttcttcgttacctgaaatttccgggaaa
ctgcataatgtcaccagtttacgaacagaaatcacacaaatcaaagaaattaaagccgga
gactccgtaggatacaaccggcgttttatcgcgaaaaaaccccatcgtattgctacggtt
tctgtgggttatgccgacggacttttccggtcattgggcaacggaaatattactttttat
attcacgggcaaccggcaccggtggtcggagacatttgcatggacatgtgtatgattgat
gtaaccggtatggaagtgcgcgaaggtgatccggtaatgattttctataccgatcatcct
gtttctgagctggcccaggctgccggaaccattccttacgaagttctcagtcgcatctca
cgccgcgtaaaacgggtttattatcacgaatag
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