Candidatus Sulfidibacterium hydrothermale: LA303_07270
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Entry
LA303_07270 CDS
T07944
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA303_07270 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shyr03019
]
LA303_07270 (rny)
Messenger RNA biogenesis [BR:
shyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA303_07270 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Asp_Glu_race
Motif
Other DBs
NCBI-ProteinID:
UBM61225
LinkDB
All DBs
Position
1849343..1850893
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AA seq
516 aa
AA seq
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MLMETIIIDAVLVLAGIGIGVAVTYYVLKNALLKKSRAILEEAKEKAEVVKKEKILQAKE
KFLQLKSEHQKIIDEKNRNIQKSENRIRQKEATLNQKLQETQRKNNELNALKNNLNAQLE
IVNKKQEELNKLHAEEVEKLENISKLSAREAKDQLIESLKGEAKAEAMMMIREITEEARL
TAERNAKKIVVETIQRTASEHAIENTVTVFNIDNENIKGRIIGREGRNIRALESLTGIEI
IIDDTPDAILLSGFDPIRREVARLSLQKLVADGRIHPARIEEVVTKTKKEVEQEILETGK
RTVIDLGIHNMHHELIRLVGRMRYRSSYGQNLLSHSIEVARLSATMAAELGLNPKKAKRA
GLLHDIGKIAENEAELPHALLGKKLAEKYKEHPDVCNAIGAHHDEIEMETLIAPIVQVCD
AISGSRPGARREVVEAYIQRLKKLEEIALGYPGVVKTYAIQAGRELRVIVGADKVSDQQA
DSLSYDLSKKIQEEMTYPGQIKITVIRETRAINYAK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgcttatggaaacaataattattgacgcagtgcttgtgttggcgggcatcggtatcggc
gtggccgttacttattacgtgctcaaaaatgccctgctcaaaaaaagtagggccattctt
gaagaagccaaggagaaagccgaagtagtgaaaaaagaaaaaattctccaggcaaaagaa
aaatttcttcagctgaaaagcgaacaccagaaaattattgacgaaaaaaatcgaaatatc
cagaaatcggaaaaccggattcgtcaaaaggaagccactttaaatcaaaaactacaggaa
acccaacgaaaaaataatgaactaaacgcactgaaaaacaatttgaatgcccaactcgaa
atcgttaataaaaaacaggaagaattaaataaacttcacgctgaagaagttgaaaaactg
gaaaatatcagtaaactttcggcccgcgaagccaaagatcagcttatcgaatcattaaaa
ggcgaagccaaggcggaagccatgatgatgattcgcgaaattaccgaagaagcccgtctt
acagccgaacgtaatgccaaaaaaattgtggtggaaaccattcagcgtacggcttctgag
catgccatcgaaaacacggtcacagtctttaatattgacaatgaaaatataaaaggccgg
attatcggccgtgaggggcgcaatattcgtgcgctggaatcccttaccggtatcgaaatt
attatcgatgatacgccggatgccattttgctttccggttttgaccctatccggcgtgaa
gtagcccggctttcgcttcaaaagctggtcgccgatggccgtattcatccggcccgtatt
gaagaagtggtaaccaaaaccaaaaaagaagtagaacaggaaattctggaaaccggtaaa
cggacggtaattgacctgggaattcacaacatgcatcacgagcttatccggctggttgga
cggatgcgctaccgctcttcctacggacaaaacctgctttcgcactccattgaagtagcc
cggttaagtgctaccatggcagctgaactgggattgaatcccaaaaaagccaaacgggcc
gggttgttgcacgatattggaaagattgccgaaaacgaagccgaattacctcatgctttg
ctgggtaaaaaactggccgaaaaatacaaggaacatcccgatgtttgcaatgccattggc
gctcaccacgatgaaattgaaatggaaacactgattgctcccattgttcaggtgtgtgat
gccatctctggctctcgtccgggggcacgtcgtgaagtggtagaagcatacattcaacgg
ctgaagaaactggaagaaattgcactgggttatccgggtgttgtaaaaacttatgccatc
caggccggtcgtgaattgcgggtaatcgtgggagccgacaaggtttctgaccagcaggca
gacagcctctcgtacgatttgtcgaagaaaatacaggaagagatgacttatccggggcag
attaaaattaccgtcatccgggaaacaagagccataaattacgccaagtaa
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