Candidatus Sulfidibacterium hydrothermale: LA303_07680
Help
Entry
LA303_07680 CDS
T07944
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03030
DNA replication
shyr03430
Mismatch repair
shyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA303_07680 (dnaE)
03430 Mismatch repair
LA303_07680 (dnaE)
03440 Homologous recombination
LA303_07680 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyr03032
]
LA303_07680 (dnaE)
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_07680 (dnaE)
Enzymes [BR:
shyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LA303_07680 (dnaE)
DNA replication proteins [BR:
shyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LA303_07680 (dnaE)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LA303_07680 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
UBM61302
LinkDB
All DBs
Position
1937495..1941751
Genome browser
AA seq
1418 aa
AA seq
DB search
MFLIYDTETTGLPQDYNAPLTDFDNWPRLVQLAWQIHDENGELVEVQNFIVKPEGFIIPR
ATEKIHGISTERALREGKPLEEVLDIFVAALNKVKVIAGHNIDFDNTIVKVECLRKEKAC
PIAEKIIIDTKEVSTDYCAIPGGRGGKFKWPKLSELHQKLFGEDFDAAHNASADVQATAR
AFLELLRLNVITPQMVQLPEETVQNFRKKNPDPIRPIGLKVEAYHEDKTPETKAETDTGV
AEPAKESQPQKKGEQPFVHLHVHTQFSVLDGLSKIPELVKKAKDDGMTAVAITDHGNMFG
VKSFHQTAVKEGIKPILGCEVYVARRGMDKKETKQDASGWHLVLLAKNETGYQNLLKMVS
AGWTRGYYYKPRIDKALLRQHHEGIIALSACLGGEIPSKIMNEGVEKAEEALKEYLDIFG
DDFYLELQRHQSGDAEIDRKVYEDQVYVNRELLALSKKHGVKVVATNDVHFVHQEDAGAH
DRLICIGTARDLDDPNRLRYTRQEWFKTRQEMNRLFADVPEALANTQEIADKVETYELDH
KPIMPEFEIPSEFKDADDYLRYLTYEGAKERYPELTKEITDRIDFELETIKSMGFPDYFL
IVWDFLKAAREMGVSVGPGRGSAAGSVVAYCLKITQIDPIKYKLLFERFLNPDRISMPDI
DIDFDDDGREKVLHYVSEKYGKERVAHLITFGSMAAKSAIRDVARVQKLPLSEADRLAKM
IPERPGITLEQAINEVPELKQELENGKPEVASVLRNALTLEGSVRNTGTHACGIIIARER
LDKYVPVSTVKESVLEYATQYDGKYIESIGLLKMDFLGLKTLSIIKDTLENIKRSKGIEV
DIDNVPLDDKETYELYSRGETTGLFQFESDGMKKYLQELKPTRFEDLIAMNALYRPGPMQ
YIPSFIKRKHGQEEIKYDVPMMEEILKETYGITVYQEQVMLLSRLMAGFTRGQSDSLRKA
MGKKKLAEMAKLKVEYLKGCEKNGIPKDKAEKIWKDWEEFAKYAFNKSHATCYSYVSYQT
AYLKAHYPAEFMAAVLSRNLNNIDKITFFTKEAERMGIQVLGPDINESSLNFTVNQNGII
RFGLAAIKGVGGSAVEDIIAEREKNGPYENIFDFAKRVNLKSVNKRSFEALAKAGAFDCF
EGTHRAQYFFKENENDTEFIEKVIRFAQKYQQKKNSAQVSLFGESAGFEVADPPIPACEP
WTKAVQLRHEKEVTGFYISGHPLDAFELTLKHLCNVDMAHLRDHLSDYKGKEVLFGGMVT
STLQRTAKNGSLFGVMTLEDYTGAMDFRLFKENYLKMRHMMVVGNLLLVRAKVEESRFNE
GNVNVNIQDMMLLEDALNQMMRKLILFLNPESLSEPFIDELAKLQQENPGNAQLFISLSS
VDNKRPVILRSRTGHVDPRLFLHHLKKKWGNLSYKLTK
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtttttaatttacgataccgaaacaacaggattgccccaggattataatgccccgtta
actgattttgacaactggccccggctggtacagttagcctggcaaattcatgatgaaaac
ggagagctggtagaagtgcagaatttcattgtgaaacccgaaggttttattattccgcgg
gcgacagaaaaaattcatggcatctccaccgagcgggcactccgggaaggaaaacccctg
gaagaagtgctggatatttttgtggccgcactgaacaaggtaaaagtaattgccggacac
aatattgattttgacaataccattgtaaaagtagagtgcctgcgaaaagaaaaagcatgt
ccgattgctgaaaagatcattattgacaccaaagaggtttccactgattattgtgccatt
ccgggcggacggggcggaaagttcaaatggcccaaactttccgagttacatcaaaaactt
tttggcgaagattttgatgcggcccataatgcctcggcagacgtccaggctacggcacgg
gcatttcttgaattattgcggctaaatgtcattacgccgcaaatggttcagttaccggaa
gaaacagtacaaaatttccggaaaaaaaatcccgatcccatccgtcccatcggattaaaa
gtagaagcctatcacgaagacaaaacaccggaaacaaaggccgaaacagataccggagta
gccgagccggcaaaggaaagccaaccgcagaaaaaaggagagcaaccgtttgttcacctg
catgtacatacccagttttcggtgttagacggattgtcaaaaattccggagctggtaaag
aaagccaaagacgacggaatgacggcggtagccatcaccgaccacggaaacatgtttggg
gtaaaaagttttcaccaaacagcagtcaaagaagggattaagcccattttaggatgcgaa
gtatatgtggcacgccgtggaatggataaaaaagaaaccaagcaggatgcctcgggctgg
catctggtattgctggccaaaaacgaaaccggataccagaatctgttaaagatggtttcg
gcaggctggacccggggttattactacaaaccccgaatagacaaagcgctgctgcgtcag
catcacgaagggatcattgccttatcggcctgccttggcggcgagattccgtcgaaaatc
atgaacgagggcgttgaaaaagcagaagaagcactcaaagaataccttgatattttcgga
gacgatttttatctggaattgcaaaggcatcaaagtggcgacgcagaaattgaccgtaag
gtttatgaagaccaggtttatgtaaaccgcgagttgctggcgctttctaaaaagcacggc
gttaaagtggttgccaccaacgatgttcactttgttcatcaggaagatgccggagcacac
gaccggttgatatgtatcggcaccgcccgcgatttggacgatccgaaccggctgcgttac
acccggcaggagtggtttaaaacccgccaggaaatgaaccggctgtttgccgacgtaccg
gaagcgctggccaacacgcaggaaattgccgacaaggtcgaaacttatgagctggaccac
aagcccattatgcccgaatttgaaattccttccgagtttaaagatgccgacgattatctg
cggtatctgacttacgaaggcgccaaagaacgctatcccgagctcaccaaagagatcacc
gaccggattgactttgagctggaaaccattaaaagcatgggtttccccgattattttctc
atcgtttgggattttctgaaagcggcccgtgagatgggcgtttcggtaggaccgggcagg
ggaagcgccgccggatcggtagtagcttattgcctgaaaatcacccaaatcgatccgatc
aagtacaaattactttttgaacgtttcctgaatcccgaccggatttccatgccggatatc
gatattgattttgacgatgacggacgggaaaaagtactgcattatgtttcggaaaaatac
ggcaaagagcgggtagcccatttgatcactttcggaagtatggctgccaaatcagccatt
cgcgatgtggcacgggtacagaagctgccgctttcggaagccgaccggctggccaagatg
attccggaaaggcccggtattacgctggaacaggccatcaacgaagtgcctgagctaaaa
caggaactcgaaaacggaaaaccggaagtggcatcggtattgcgaaatgcgctcaccctg
gaaggctcggtacgaaacaccggcacccacgcctgtgggatcatcattgcccgcgaacgg
ctggataaatatgtgccggtttccaccgtaaaagaatcggttttggagtacgccacgcag
tacgatggaaaatacattgaatccatcgggctgttaaaaatggattttctcgggctgaaa
acgctttccatcatcaaagacacgctggaaaacatcaaacggtctaaaggcattgaagtg
gatattgacaacgtgccgctggacgacaaggaaacctacgagctgtacagccggggcgaa
accaccgggttgtttcagtttgaatcggacgggatgaaaaaatacctgcaggagctaaaa
cccacgcggttcgaagacctgatcgccatgaatgccctttaccgtccggggccaatgcag
tacattccttctttcatcaaaaggaaacacgggcaggaagaaatcaagtacgatgtgccc
atgatggaagagatcctgaaagagacttacggaattaccgtttatcaggaacaggtgatg
ctgttgtcgcgattgatggccggttttacccgcgggcaatccgactcgctccggaaagcg
atgggaaagaaaaagctggccgagatggccaagctgaaagtggaatacctaaaaggatgt
gaaaaaaacgggattcccaaagacaaagcggaaaaaatctggaaagactgggaagaattt
gccaaatatgcctttaataaatcgcatgctacctgctattcgtacgtgtcgtaccaaacc
gcttatctgaaagcccattatccggccgaatttatggcggctgttctgagccgtaacctg
aacaacatcgacaagattacgttcttcaccaaagaggctgagcggatgggcattcaggtg
ctggggccggacattaacgagagctcgctgaatttcaccgtaaaccaaaacggtattatc
cgttttgggctggcagccattaaaggggtaggaggcagcgcagtggaagacatcattgcc
gaacgcgaaaaaaacggtccgtatgaaaatatttttgattttgccaaacgggtaaactta
aaatcggtaaacaaacggagttttgaggctttggccaaagccggtgcttttgattgtttt
gaaggcacacaccgggcacaatattttttcaaagaaaacgagaacgatacggagtttatt
gaaaaagtgattcgctttgcccaaaaatatcagcagaagaaaaactcggcacaggtttcg
ctttttggtgagagtgccggttttgaagttgccgatccgcccatccccgcttgtgaaccc
tggacgaaagcggttcagctacggcatgaaaaagaggttaccggattttacatttccggt
catccgctggatgcttttgaactcacactaaagcatttatgcaatgtggacatggcccat
ttgcgcgatcatctgtctgattacaaaggaaaagaagttttgtttggcgggatggttact
tccacattgcaacgaacagcaaaaaacggttcgttgtttggcgtaatgacactggaagac
tacaccggagccatggatttccggttattcaaagaaaattacctgaagatgcggcacatg
atggtggttggaaacctgttgcttgtacgggcaaaggtagaagaaagccgttttaatgaa
ggaaatgtgaatgtgaacatccaggatatgatgttgctggaagatgctttaaatcagatg
atgagaaagctgattttgtttttaaacccggaaagtctttcggaaccgtttattgatgaa
ctggccaaattgcaacaggagaatccggggaatgcacagcttttcatttcactaagttct
gttgacaataagcggccggtaattttgcggagccgtaccggacacgttgatccgcgtctt
tttttgcatcatttgaagaaaaagtggggaaatctttcatacaagttaaccaagtag
DBGET
integrated database retrieval system
