Candidatus Sulfidibacterium hydrothermale: LA303_08605
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Entry
LA303_08605 CDS
T07944
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA303_08605 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shyr03021
]
LA303_08605 (rho)
03019 Messenger RNA biogenesis [BR:
shyr03019
]
LA303_08605 (rho)
Transcription machinery [BR:
shyr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LA303_08605 (rho)
Messenger RNA biogenesis [BR:
shyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LA303_08605 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
AAA_22
NACHT
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UBM61478
LinkDB
All DBs
Position
2133687..2135612
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AA seq
641 aa
AA seq
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MYDIITLNNKLVGELRQIAKELGIPRTEKLVKRDLIYKILDQQALIPVKESSSDKEKPHV
KRTYRRKKQESSSASAATETEKTNPEEAKSPEENKEQTETAQAENKPKRRRGRPRKNQKK
EEAAAEKNETKSENKTGKPAEEKNQAPSLFDTPKADNQENTQKTAEKQPEETTKESSETT
ENTAQSSASRPKSHLEQYEARVKRRKRITRNTSDNNNPDNKEQKQEQKQEDKRNGEKSTS
DVSSEPKQQAESKEKPAEKETPKEEPKYNLEGIINSEGVLEIMPDGYGFLRSSDYNYLNS
PDDIYVSQSQIKLFGLKTGDTVLGTIRPPKEGEKYFPLIKVITINGRTPEEIRDRIPFDF
LTPLFPQKKFKLTGHPKETISTRIMDMFCPIGKGQRGLIVSQPKTGKTVLLKEVANAIAY
NHPEVYLIILLIDERPEEVTDMARSVNAEVIASTFDEPAEKHVKIANLVLEKAKRMTESG
HDVVILLDSITRLARAYNTVSPASGKVLSGGVEANALQKPKRFFGAARQIEDGGSLTILA
TALIDTGSKMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAIDIVASSTRREDLLLDKEVL
QRVWILRNHLSDMNPVEAMEFLKERMKFTKTNEEFLLSMNG
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattataacgctgaacaacaagctggtaggcgagctacgacagattgccaaa
gagttgggtattccccgaaccgaaaaactggtcaagcgcgatttgatttataaaatttta
gaccaacaggctttaattcctgtgaaagagtcttcttcggataaagaaaagccccatgta
aaacggacttaccggcgaaagaaacaagaatcatcttctgcctctgcagcaaccgaaact
gaaaaaacaaatccggaagaagcaaaaagtccggaagaaaataaagaacagaccgaaaca
gcacaagcagaaaacaaacccaaacgccgtcgcggacgtccgcgtaaaaatcagaagaag
gaagaagccgctgcagaaaaaaacgaaaccaaaagcgaaaacaaaacgggaaaaccggca
gaagaaaaaaaccaagctccttctcttttcgacactccaaaagctgataaccaagaaaat
acccaaaaaactgccgaaaaacagccggaagaaacaacaaaagaatcatcagaaacaaca
gagaacacggctcagtcctcagcttcgcgtccgaaatctcatcttgaacaatatgaagcc
cgtgtaaaacgcagaaaacggattacacgaaatacttcagataataacaatccggacaac
aaagagcaaaaacaagaacaaaagcaagaagacaaaagaaacggggaaaagagcacttct
gatgtttcatcagagcccaaacaacaagcagaaagcaaagagaaaccggccgagaaagaa
acacccaaagaagaacccaaatacaatctggaaggcataatcaactcggaaggcgttttg
gaaattatgcctgacggatacggttttctgcgttcttcggattacaactaccttaactca
ccggacgatatttatgtatcccagtcgcaaatcaaactttttggtctgaaaacaggagac
acggttctgggaaccattcgtccacctaaagaaggagaaaaatattttccgttaatcaaa
gtcattaccattaacggcagaacaccggaagaaatccgcgaccggattcctttcgacttt
ttaacgccgttattcccacaaaagaaatttaaacttaccggtcatcctaaagaaaccatt
tccactcgaatcatggacatgttttgtccgattggaaaaggacaacgcgggcttatcgtt
tcacaacccaaaaccggaaaaacagttcttctgaaagaagtagccaatgccattgcttac
aatcacccggaagtttatctgatcattttattgattgacgaacgtccggaagaggttacc
gacatggccagaagtgtaaatgccgaagtgattgcttctacttttgatgaaccggcagag
aaacacgtaaagattgccaacctggtactggaaaaagccaaacggatgaccgaaagcggc
catgacgtggttattctgcttgactccatcacccggcttgcccgtgcatacaacacggtt
tcaccggcttcgggaaaagtgctttccggtggtgtggaagccaatgcgctacagaaaccg
aaacgcttttttggtgctgcacggcaaattgaagacggtggttcattgaccattctggcc
actgcccttatcgataccggttcaaaaatggacgaagtgatcttcgaagaatttaaaggt
accggtaatatggagcttcagctggacagaaaactttccaacaaacggattttcccggcc
atcgacattgttgcatccagtacccgccgcgaagacttactgcttgacaaagaagtactt
caacgggtttggatcctccggaaccatttgtcggatatgaatccggtagaggccatggag
tttctgaaagaaagaatgaagtttaccaaaacgaacgaagaatttttgttgtccatgaac
ggatag
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