Candidatus Sulfidibacterium hydrothermale: LA303_08715
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Entry
LA303_08715 CDS
T07944
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shyr03000
]
LA303_08715
Transcription factors [BR:
shyr03000
]
Prokaryotic type
Helix-turn-helix
Other families
LA303_08715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
PAS
GAF
AAA_PrkA
AAA_5
PAS_4
AAA_2
Mga
PAS_8
PAS_9
AAA_16
AAA
HTH_23
HTH_17
HTH_28
HTH_30
GAF_2
Xre-like-HTH
HTH_50
NB-ARC
HTH_7
Phage_CI_repr
AAA_7
UPF0175
HTH_29
Motif
Other DBs
NCBI-ProteinID:
UBM61497
LinkDB
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Position
complement(2157044..2158972)
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AA seq
642 aa
AA seq
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MNNDIRQGNTDIKDGEVMINFSDENDQPGFNRISAKPAVIFDKERSKKLLNDNLAFIEIA
KPCLSHLTELLNKTGFIAILSDKDGIILDVTGEEDVLKKAEKLNLSLGTSFNEKDVGINA
IGRAILENKPVQVTGNQHALKIFYAWTCAAAPIHDAKGNILGVLCLAGKKSNRQIHTLGW
VISTAKVIENRIENKLVQKQLYDAQYYAFAMMNQLSFGLFAIDKEDKIIWANNTGCRIIN
IKRSLLINTSINDIFPTWPKVRKMLQLKRDFIDEEHSFNIPGLHENFLFNAYLIHSQENE
IIGYQLSFRPFKRFLGLANKYVGMVATHQFDDIFCVSDKMKKIIEYARTVAHSPASILIT
GESGTGKEVFAQAIHNASERKHGCFVAINCGAISPSLIESELFGYEEGAFTGAVKGGRIG
KFEMANGGTLFLDEIGDMPMEMQIKLLRAIQEGQFCRVGGSNVVSVDVRIIAATNKNLEE
EIKQNRFRLDLYYRINVVNIKLPALRERKEDIPLLAHYFLETKANKLNKPMVRLSQTLLK
EIISYDWPGNIRELENYIEKVTIMNRPVHIQNQIPDETSSADNVDPESDFVLQSLQDMEK
QLIERTIKATKINMTQAAKILGIGRNTLYQKIKRYNININEK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgacatacggcagggaaatacggatattaaagatggagaagtgatgattaac
ttttccgatgaaaacgaccagcccggttttaacaggatcagtgccaaaccggctgttatt
tttgacaaggaacgttcaaaaaaactactgaatgataaccttgcttttattgagattgcg
aagccctgtttaagccatttaacggaattattaaataaaacaggtttcatcgcaatcttg
tcagacaaagacggtattattttagatgtgacgggggaagaagacgtgctgaaaaaggct
gaaaaattaaatctgtctttggggacttcctttaatgaaaaggatgtaggaatcaatgca
ataggacgtgcaattttggaaaacaaacctgttcaggtaacagggaaccaacatgctttg
aaaatattttatgcgtggacgtgtgctgctgcacctatacacgatgccaagggaaatatt
ttgggcgtattgtgtttagccgggaaaaaatcgaacaggcaaattcatactttaggttgg
gtaatatcaacggccaaagtaattgaaaatagaatcgagaataaattggtccaaaaacaa
ttgtatgatgcgcagtactatgcttttgctatgatgaatcaattgtcttttggacttttt
gccatagataaagaggacaagattatttgggccaataacaccggttgccggattataaat
atcaaacggagccttcttattaatacttccatcaatgatatttttccgacatggcccaaa
gtcagaaagatgttgcaattaaaaagggattttattgatgaagaacacagttttaacatt
cccggcttgcatgagaattttctgttcaatgcgtatcttattcattcgcaagaaaatgag
attatcggatatcagctttctttccggccgttcaaacgttttttgggcctggccaataaa
tatgtgggcatggtagctactcatcaatttgatgatattttttgtgtaagtgataaaatg
aaaaagataatagagtatgcacgtacagtagcacatagcccggcttccatattaataacc
ggtgaaagcggcacgggaaaggaagtttttgctcaggcgattcataatgcaagtgaacga
aaacacggttgttttgtggcgatcaactgcggcgctatttcaccctctttgattgaaagt
gaactgtttggatatgaagaaggagcctttaccggtgcggttaaaggcggacgtattggt
aaattcgaaatggcaaatggaggcactttatttcttgatgaaattggcgatatgccgatg
gagatgcaaatcaaactattaagagcgatacaagaaggccagttttgccgggttgggggg
agtaatgttgtttcggttgatgtccggataatcgcagcaacaaataaaaacctggaagag
gaaataaaacaaaaccgttttcgtctggatttgtattatcgtattaatgtggtaaatata
aaattaccggctttaagagaacggaaagaagatatcccgcttctggcacattattttctg
gaaacaaaagcaaataaactaaataaaccgatggtaaggcttagccaaaccctgctaaaa
gaaattatttcttacgactggcctggaaacatacgggaacttgaaaattatattgaaaaa
gttaccattatgaacagaccggttcatatccaaaaccaaatacccgatgagacttcttcg
gcagataatgttgatcccgaaagtgatttcgttcttcagtcgcttcaggatatggaaaaa
caattgatcgagagaaccattaaagcaacaaaaataaacatgactcaggctgcaaaaata
ttggggattggcagaaatacgctttatcaaaaaataaaacgctacaatattaacattaac
gaaaagtaa
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