Candidatus Sulfidibacterium hydrothermale: LA303_09810
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Entry
LA303_09810 CDS
T07944
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA303_09810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shyr03021
]
LA303_09810
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_09810
Enzymes [BR:
shyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA303_09810
Transcription machinery [BR:
shyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA303_09810
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA303_09810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
UBM61698
LinkDB
All DBs
Position
complement(2412588..2413580)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMNETDGFRGVFEFRPLEPGFGITIGNALRRILLSSLEGFAITNVKIA
GVVHEFSSIDGVIEDVTDIILNLKKVRFKQQIPDENTEKVNIVIGDQSEFKAGDINKFLS
VFQVLNTDEMICHLDPSVKLSMEITIGKGRGYVPAEENKDPDAPVGTIAIDSIHTPIKNV
KYSIENYRVEQKTDYEKLILEIITDGSIHPKDALKEAAKILIQHFMLFSDEKISIDSEEK
SVSEEFDENTLHIRQLLKTKLVDLDLSVRALNCLKAADVDTLGDLVSYNKSDLLKFRNFG
KKSLTELEQLVESKNLEFGMNVAKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaagcctgataaggtgattatgaatgaaaccgatggcttc
agaggcgtatttgaatttcgtcctctcgaaccaggttttggaattactattggcaatgcc
ttgcggagaattcttctttcctcgctcgaaggttttgccattacaaacgttaaaattgcg
ggcgttgtacacgaattttcttctattgacggagtcattgaagatgttaccgatattatc
ctcaacctgaagaaagtacggtttaaacagcaaattcctgatgaaaatacggaaaaagta
aatatcgttattggtgatcagagcgagtttaaagccggtgatattaataaattcctttct
gtttttcaggtactgaatacggacgaaatgatttgccacctcgacccgtcggtaaaactg
agtatggaaattaccatcggtaaaggaagaggatacgtgccggcagaagaaaataaagat
cccgacgcaccggtgggtactattgccatcgactccattcacacgccgattaaaaatgtg
aaatacagcatcgaaaattatcgtgtcgaacagaaaaccgactatgaaaaactgattctc
gaaatcattacggatggttcaattcatcctaaagatgctttaaaagaagcggcaaagatt
ctgatccagcactttatgctgttctccgatgagaaaatttccattgattcagaagaaaaa
tccgtttcggaagagtttgatgaaaatacattgcatattcgtcagctgttgaaaaccaaa
ttggttgacctggatttgtctgttcgtgccctcaactgccttaaagcagccgatgtggat
acattaggtgatctggtttcctataacaaaagtgatttgttgaaatttagaaattttggt
aagaagtctttaactgagctggaacaactggttgagtcgaagaacttggagtttggaatg
aatgtagcaaaatataaattagataaggattaa
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