Candidatus Sulfidibacterium hydrothermale: LA303_11980
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Entry
LA303_11980 CDS
T07944
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr00220
Arginine biosynthesis
shyr00240
Pyrimidine metabolism
shyr00250
Alanine, aspartate and glutamate metabolism
shyr01100
Metabolic pathways
shyr01110
Biosynthesis of secondary metabolites
shyr01240
Biosynthesis of cofactors
Module
shyr_M00051
De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
LA303_11980 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
LA303_11980 (carB)
00220 Arginine biosynthesis
LA303_11980 (carB)
Enzymes [BR:
shyr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
LA303_11980 (carB)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
Dala_Dala_lig_C
ATPgrasp_Ter
GARS_A
RimK
ATP-grasp_3
ATP-grasp_4
ATP-grasp_5
TrkA_N
ATP-grasp_2
GSH-S_ATP
DUF6003
Adenylate_cycl
HicA_toxin
Motif
Other DBs
NCBI-ProteinID:
UBM62105
LinkDB
All DBs
Position
complement(2913606..2916827)
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AA seq
1073 aa
AA seq
DB search
MEKQIKKVLVLGSGALKIGEAGEFDYSGSQALKALKEEGIETVLINPNIATVQTSEGIAD
KLYFLPVTPWFVEKVIEKEKPQGILLAFGGQTALNCGVELYRSEVLKKHGVEVLGTPVES
IIQTEDRERFAEMLHTAGIKTPQSVAVTNRQEALEAARKIGFPLIIRAAYTLGGQGSGFC
SDEEELSTLLSKSFSYSNQVLVEESLKGWKEVEYEVVRDRYDNVVTVCNMENFDPLGIHT
GESIVVAPSQTLTNREYHKLRQLSMDIARAVGIIGECNVQFALDPDSEDYRVIEVNARLS
RSSALASKATGYPLAFVAAKLGLGYGLHELKNSVTRTTPAFFEPALDYLVVKIPRWDLNK
FVGVSHEIGSGMKSVGEVMAIGRSFEEAFQKGLRMVGVGMHGFAANKALKPRNLAQALQK
PTDMRVFYLAEALHRGWPVEKIHQHTRIDKWFLEKLKNILDIEQELLTFNHLEDLPDALL
REAKQAGFSDFQIARLIYNDRAIGSTDDEILEVRNHRQKRGIVPSVKQIDTLAAEYPAQT
NYLYLTYHGSENDIRYENDGRSVIVLGSGAYRIGSSVEFDWSSVNALDTIRRKGFRAVMI
NYNPETVSTDYDRCDRLYLEELTFERVLDIAGLENPHGVIVSTGGQIPNNLAMRLHRQKI
PVLGTAPENIDRAENRYKFSEMLDKIGVHQPEWRELTSLEDIYSFTEEVGFPVLIRPSYV
LSGAAMNVVSNKNELKHFLRLATEVSKQYPVVVSKFLTEAKEIEMDAVARDGDVVVYAIS
EHVEFAGVHSGDATIMFPPQKVYVETVRRIKRISRQIARELHISGPFNIQFLAKDNDIKV
IECNLRASRSFPFVSKVLNTNFIDYAVRIMLGENPEKPGKSLFDIDHIGVKAPQFSFSRL
SKADPVLGVDMVSTGEVGCIGDDYYEAILKALLSVGYRIPEKGILISSGPLRSKTELINS
ARMLQEKGYQLYATKGTHDFYTKNGIETIRVFWPDEKQQPNAYDLIKNKVVDLVINVPKN
LTSRELSNDYTIRRAAVDFNIPLITNARLASAFVYAISRYKLEDLPIKSRDEY
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacagataaaaaaagtccttgttcttggttccggtgccctgaaaatcggcgaa
gccggcgagttcgattacagcggcagccaggcgttgaaagcgctgaaagaagaaggaata
gaaaccgtcctgatcaatcccaacattgccacggtacaaacgtcggaaggcattgccgac
aagctttattttctgcccgttactccttggtttgtggaaaaggtcatcgaaaaagaaaaa
ccgcagggcatcctgctggccttcggcggacaaacggccctgaactgtggcgtggaactg
taccgttcggaagtactgaaaaaacacggagtggaagtactgggtacgccggtggaatcg
atcattcaaaccgaagaccgcgaacgttttgccgaaatgctacatactgccggcatcaaa
accccgcaatcggtagccgttaccaaccggcaggaagcccttgaagcggcacggaaaata
ggtttcccgctgattatccgggcggcttacacgctgggcggccagggcagcggattttgt
tccgatgaagaagaactttccacgctgttgtccaaatccttttcttattcaaatcaggta
ttggtggaagaatcgcttaaaggctggaaagaagtggaatacgaagtggttcgcgaccgg
tacgacaacgtggttaccgtgtgtaacatggaaaatttcgacccgcttggcatccacacc
ggcgaaagcattgtggtggccccatcgcaaacacttaccaaccgcgaataccacaaatta
cgacaactttccatggacattgcccgggctgtaggcatcattggcgaatgcaacgtacag
tttgccctcgaccctgattcggaagactaccgggttattgaagtcaatgcccggctgtcg
cgttccagtgcgctggcatccaaagctaccggttatccgctggcgtttgtggcggccaag
ctgggactgggatacggcctgcacgaactgaaaaacagcgttacccggactacaccggct
ttttttgaaccggcactggattatcttgtggtgaaaattccgcgatgggatttaaacaag
ttcgtcggtgtttcgcacgaaatcggttccgggatgaagagcgtgggcgaagtgatggcc
atcggccggagttttgaagaagcttttcagaaaggactgcgcatggtgggcgtaggcatg
cacggctttgctgccaacaaagcactgaaaccgcgcaatcttgcgcaggcattacaaaag
cctaccgacatgcgggttttctaccttgccgaagcactgcaccggggatggccagtggaa
aaaatccatcaacacacccgcattgacaaatggtttctcgaaaagctgaagaacatactg
gatatcgagcaggaactgctaacttttaaccacctggaagatttaccggatgcgctgttg
cgcgaagccaaacaagccggattttccgattttcagattgcccgcctgatttataacgac
cgggccatcggcagtaccgacgatgaaattctggaagtgcgaaatcaccggcaaaaacgg
ggaattgtcccttccgttaagcaaattgatacgctggcagccgaatacccggcacaaacc
aattatctttatctcacgtaccacggaagtgaaaacgacatccgttacgaaaacgacggc
cgttcggtcatcgtgctgggctcgggggcgtatcgcatcggtagcagcgtggaatttgac
tggtcgtcggtaaatgcactggacaccatccgtcgcaaaggctttcgtgctgtgatgatc
aactacaacccggaaacggtaagcactgattacgaccgctgcgaccggctttatctcgaa
gaactcacttttgaacgggtgctggacattgccggactggaaaatccacacggggtaatt
gtttccaccggcggacaaatacccaacaacctggccatgcggctgcaccgacaaaaaatt
cctgttttgggaaccgcccccgaaaacattgaccgcgccgaaaatcgttataaattttcg
gaaatgctggacaagattggggtacaccagcccgaatggcgcgagctgaccagcctcgaa
gatatttacagctttacggaagaagtaggctttccggtgctgattcggccttcgtatgtg
ctttcgggcgctgccatgaatgtggtttccaataaaaacgagctgaaacatttcctccgg
ctggccaccgaagtttccaaacagtatccggtggtggtttccaaattccttaccgaagcc
aaagagattgaaatggacgccgtggcccgcgacggcgacgtggttgtgtatgccatttcg
gaacatgtggaatttgccggcgttcactcgggcgatgccaccatcatgtttcccccgcaa
aaagtttacgtggaaaccgttcgccgcattaaacgcatcagccggcagattgcccgcgag
ctgcacatcagcggtccgtttaacatccagttcctggccaaagacaacgatatcaaggtc
attgaatgtaacctgcgggcttcgcgcagctttccgtttgtttccaaagtgttaaacacc
aattttatcgattatgccgtccggattatgctgggggaaaatcccgaaaaacctggaaaa
tcgcttttcgacattgaccacatcggcgtcaaggcaccacagttttccttttcgcgcctg
agcaaagccgacccggtgctcggtgtggacatggtttccacaggcgaagtgggctgtatc
ggcgacgattattacgaagccatcctgaaagcccttttgtcggtaggataccgcattccc
gaaaagggtattctgatctcttcgggaccgttgcgttcgaaaaccgagctcatcaacagc
gcccgtatgctgcaggaaaaaggatatcagctgtatgccaccaaaggcacacacgacttt
tataccaaaaacggcattgaaaccattcgtgttttctggcccgacgaaaaacagcagccc
aatgcctacgacctgatcaaaaacaaggtggtagatttggtgattaatgttccgaaaaac
ctcacttcaagagagttgagcaacgattacaccatccggcgtgccgcggtggatttcaac
attccgctcatcaccaatgcccggctggccagtgcttttgtgtatgccatcagtcgctat
aaactggaagatttgccgataaaaagccgcgacgaatattaa
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