Shinella sp. HZN7: shn_01275
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Entry
shn_01275 CDS
T04278
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
shn_01275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shz03019
]
shn_01275
03016 Transfer RNA biogenesis [BR:
shz03016
]
shn_01275
Enzymes [BR:
shz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
shn_01275
Messenger RNA biogenesis [BR:
shz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
shn_01275
Transfer RNA biogenesis [BR:
shz03016
]
Prokaryotic type
tRNA degradation factors
shn_01275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ANH02798
LinkDB
All DBs
Position
261226..263367
Genome browser
AA seq
713 aa
AA seq
DB search
MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH
DLENNPDVLSMVAASAALTISGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEEVMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFTPEDHSE
LEAEMLGLAEAELRAAYKITQKADRYAAVDAVKAKVKAHFLPEGVEPKYNAEVIGAIFKH
LQAKIVRWNILDTKSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAVVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTAEGITSLQMDIKIAGITEEIMKVALGQAQGGRKHILGEMAK
AISEGRSQLGEFAPRIEVMTIPVDKIREVIGTGGKVIREIVEKTGAKINIEDDGTIKIAS
SSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAQERV
AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVAAEKKGDGEAAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatacccatacggttgaaatcgaatgggcgggccgcccgctcaagctggaaacc
ggcaagatcgcccgccaggctgacggcgccgttctcgcgacctacggcgaaaccgtcgtt
ctcgccaccgtcgtttccgccaaggcgcccaagcccggccaggatttcttcccgctcacc
gtcaactatcaggaaaagacctacgccgccggcaagatcccgggcggctacttcaagcgt
gaaggccgtccgagcgaaaacgaaaccctcgtttcccgcctgatcgatcgcccgatccgc
ccgctcttcccggaaggctacaagaacgacacgcaggtggtcgtcaccgtcgttcagcat
gacctcgagaacaatcccgacgttctctcgatggtcgccgcgtccgcagcgctcaccatt
tccggcgttcccttcatgggtccggtcggcggcgcccgcgtcggctacatcaatggcgaa
tacgtcctgaacccgcatctcgacgagatggacgagtccgttctcgacctcgtcgtcgcc
ggcacgcaggacgccgtgctgatggtcgagtccgaagccaaggagctcaacgaagaggtc
atgctcggcgccgtcatgttcggccacaagggcttccagccggtcatcgacgcgatcatc
aagctcgctgaagtcgccgccaaggaaccgcgcgacttcaccccggaagaccattccgaa
ctcgaagccgaaatgctcggccttgccgaagccgagcttcgcgccgcctacaagatcacc
cagaaggccgaccgttacgccgccgtcgacgccgtcaaggccaaggtgaaggcgcacttc
ctgccggaaggcgtcgagccgaagtacaacgcagaagtcatcggtgccatcttcaagcac
ctgcaggccaagatcgtccgctggaacatcctcgacaccaagagccgcatcgacggccgc
gatctcgaaaccgttcgcccgatcgtctcggaagtcggtatcctgccgcgcacgcacggc
tcggccctcttcacgcgcggcgaaacccaggcggtcgtcgtcgcgaccctcggcacgggc
gaagacgagcagtatgtcgacagcctgaccggcatgtacaaggaacgcttcctgctgcac
tacaacttcccgccctactcggtcggtgaaacgggccgcatgggctccccgggccgccgc
gaaatcggccatggcaagctcgcctggcgcgccatccgcccgatgctgccgacggccgag
cagttcccctacacgctgcgcgtcgtctccgagatcaccgaatcgaacggctcgtcctcg
atggcaacggtctgcggcacctcgctcgctctcatggacgccggcgttccgctggcaaag
ccggttgccggtatcgccatgggcctgatcctcgaaggcgaccgtttcgccgttctctcc
gacatcctcggtgacgaagaccacctcggcgacatggacttcaaagtcgccggcacggcc
gaaggcatcacctcgctgcagatggacatcaagatcgccggtatcaccgaggagatcatg
aaggtcgctctcggccaggcacagggcggccgcaagcacatcctcggcgaaatggccaag
gccatctccgaaggccgcagccagctcggcgaattcgctccgcgcatcgaagtcatgacc
atcccggtcgacaagatccgtgaagtcatcggcacgggcggcaaggtcatccgcgagatc
gtcgaaaagaccggcgccaagatcaacatcgaagacgacggcacgatcaagatcgcatcg
tcctccggcaaggagatcgaagcggcccgcaagtggatccactcgatcgtcgccgagccg
gaagtcggccagatctacgaaggcacggtcgtcaagaccgccgatttcggcgccttcgtc
aacttcttcggtccgcgcgacggcctcgtgcacatctcgcagctcgcccaggagcgggtc
gccaagacctccgacgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggcttc
gacgagcgcggcaaggtgcgcctctccatgaaggtcgtcgaccaggcgaccggcaaggaa
gtcgccgccgagaagaagggcgacggcgaagccgccgagtaa
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