Shinella sp. HZN7: shn_07190
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Entry
shn_07190 CDS
T04278
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shz
Shinella sp. HZN7
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shz03032
]
shn_07190
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_07190
Enzymes [BR:
shz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
shn_07190
DNA replication proteins [BR:
shz03032
]
Prokaryotic type
DNA Topoisomerases
shn_07190
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
shn_07190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
ANH03848
UniProt:
A0A1A9FZX8
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All DBs
Position
complement(1494561..1497209)
Genome browser
AA seq
882 aa
AA seq
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MNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDSASAK
RMKDIADAVKSSDGLILATDPDREGEAISWHVLDVLKKKRVIGDKPVKRVVFNAITKAAV
LDAMRNPRDIDIALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVSEEYWNISALLKTPRGDEFEARLVSAEGKRLQARSIGNGEEANRLKTLLDGA
TYRVESVEAKPTKRNPAPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGIDIGGETVGL
ITYMRTDGVQMAPEAIDAARRAVAEQFGARYVPEKPRLYSTKAKNAQEAHEAIRPTSFDR
TPDQVKRYLDPDQLKLYDLVWKRGIASQMASAEIERTTVEIEADNGGRKAGLRATGSVIR
FDGFIAAYTDQKEDGEQPDDGDDDGRLPEINAQEKLAKQKVNASQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLATLRDREYIIIDKRKLIPEAKGRLVTAFLESFFTRYVEYDFT
ADLEEKLDKISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNEELAPLVFPKRE
DGSDPRICQVCGTGKLSLKLGKFGAFVGCSNYPDCNYTRQLSADNGSDAEANGSNEPQNL
GKDPHTGEEITLRTGRFGPYVQRGDGKEAKRASLPKGWTPASIDHEKALALLSLPRDIGQ
HPETGKMISAGIGRYGPFLLHDGGYANLESVEDVFSIGLNRAVAVIADKQAKGPGGRARG
TPAALKTLGDHPDGGPITVRDGKYGPYVNWGKVNATLPKGKAADSVTLEEALVLIADKAG
KTPAKGKAKATKTTKAAKSDDAKAAKPKAAPKAKTATKAKKA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtagttgtggaatcgcctgccaaggccaagacgatcaacaagtatctcggc
cccggctacaaggtgcttgcctccttcggccatgtgcgcgacctgcccgccaaggacggc
tccgtgcgcccggacgaggatttcgaaatgtcctgggaagtcgacagcgcttcggccaag
cgcatgaaggatatcgccgacgccgtgaaatcctccgacggcctcattcttgcgaccgac
ccggatcgcgaaggggaagccatttcctggcacgtgctggacgtcctgaagaagaagcgc
gtcatcggcgacaagccggtcaaacgcgtcgtcttcaacgccatcacaaaggcggcggtg
ctcgatgccatgcgcaacccgcgcgacatcgatatcgcgctggtcgacgcctatctcgcc
cgccgcgcgctcgactatctcgtcggcttcaatctctcgccggttctctggcgcaagctg
ccgggcgcccgctcggccggccgcgtgcagtcggtcgcgctccgcctcgtctgcgaccgg
gaagcggaaatcgagcgtttcgtctcggaagaatactggaacatctccgccctcttgaag
acgccgcgcggcgacgagttcgaggcgcgcctcgtctcggcagaaggcaaacgcctgcag
gcgcggtcgatcggcaatggcgaggaggcgaaccgcctcaagacgctgctcgacggcgcg
acctatcgcgtcgaaagcgtcgaggccaagcccaccaagcgcaacccggcaccgcccttc
accacctcgaccctgcagcaggccgcctcctccaagctcggcttctcggcatcgcgcacc
atgcaggtggcgcagaagctctatgaaggcatcgacatcggcggcgagaccgtcggtctc
atcacctatatgcgtaccgatggcgtgcagatggcgccggaggcgatcgacgccgcacgc
cgcgccgtcgccgaacagttcggcgcgcgctacgtgcccgaaaaaccccgcctctactcc
accaaggcgaagaacgcgcaggaggcccacgaggcgatccgcccgacctccttcgaccgc
acacccgaccaggtgaagcgctatctcgatccggaccagcttaagctctacgatctcgtc
tggaagcgcggcatcgccagccagatggcctcggccgaaatcgagcgcacgacggtcgag
atcgaggcggacaatggcgggcgcaaggcgggcctgcgcgccaccggttcggtcatccgc
ttcgacggcttcatcgccgcctacaccgaccagaaggaagacggcgagcagccggacgac
ggggacgacgacggccgcctgcccgaaatcaacgcgcaggaaaagctcgccaagcagaag
gtgaatgccagccagcacttcaccgagccgccgccgcgctactcggaagcctcgctcatc
aagaagatggaagagctcggcatcggccgcccgtcgacctatgccgcgacgctcgccacg
ctgcgcgaccgcgaatacatcatcatcgacaagcgcaagctgatcccggaagccaagggc
cgcctcgtcacggccttcctcgaaagcttcttcacccgctatgtcgaatacgatttcacg
gcggatctggaagaaaagctcgacaagatctcggccggcgaactcgactggaagcaggtc
ctccgcgatttctggaaggattttttcgcgcagatcgaggacaccaaggaactgcgcgtc
accaacgtgctcgacgcgctgaacgaggaactggccccgctggtcttccccaagcgcgag
gacggcagcgacccgcgcatctgccaggtctgcggcaccggcaagctttcgctgaagctc
ggcaagttcggcgccttcgtcggctgctcgaactatccggactgcaactacacccgccag
ctttccgccgacaatggctcggatgcggaggcgaatggctccaacgagccgcagaacctc
ggcaaggacccgcataccggcgaggagatcacgctgcgcaccggccgcttcggaccctat
gtgcagcgcggagacggcaaggaggccaagcgcgccagcctgccgaagggctggacgccg
gcgagcatcgaccacgagaaggcgctcgccctgctctcgctgccgcgcgacatcggccag
cacccggaaaccggcaagatgatctccgccggcatcggccgctacggcccgttcctgctg
catgacggcggctatgccaatctcgaaagcgtcgaggacgtcttctcgatcggcctcaac
cgcgccgttgccgtgatcgccgacaagcaggcgaagggtcccggcggccgcgcgcgaggc
acgcccgccgccctgaagacgcttggcgaccatccggacggcggccccatcacggtgcgc
gacggcaagtacggcccctatgtcaactggggcaaggtcaacgcgacattgcccaagggc
aaggccgccgacagcgtcacgctggaggaggcgctcgtgctgatcgccgacaaggccggc
aagacgcccgccaagggcaaggccaaggcgacgaagaccaccaaggcggcgaagtccgac
gatgccaaggccgcaaagccgaaggcagcgcccaaggccaagaccgcaaccaaggcaaag
aaggcctga
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