Shinella sp. HZN7: shn_07335
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Entry
shn_07335 CDS
T04278
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
shn_07335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shz03019
]
shn_07335
03009 Ribosome biogenesis [BR:
shz03009
]
shn_07335
Enzymes [BR:
shz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
shn_07335
Messenger RNA biogenesis [BR:
shz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
shn_07335
Ribosome biogenesis [BR:
shz03009
]
Prokaryotic type
rRNA processing factors
shn_07335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANH03874
UniProt:
A0A1A9FYY8
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All DBs
Position
complement(1521152..1524031)
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AA seq
959 aa
AA seq
DB search
MAEKMLIDASHAEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDDDIEPVETATDLSEDTETAE
VAEAPAAAEEAPVAAAAEAEVEVVETAAEPEVAEAAAAPAEEAPAEKPKKPRRPRKAKAK
AEDAPAAEEAAAPAESGDDETPGGAMAMAVDTDEISEPAERSRGRRRRDDDDDDDDHHGE
EKEVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTY
LSLAGRYSVLMPNTARGGGISRKITNLQDRKRLKEIARDLEVPQGMGVILRTAGANRTRV
EVKRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEIIVAGEEGYR
EAKSFMKMLMPSHAKVVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEAL
VSIDVNSGRSTREHSIEETALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAV
EKRLKDHLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQSSV
ALHVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRGTIIDYEGRFGVAIIIEADAHVG
AQHFAIDRGEAVENPVKIEQILHFEPEPEDDDIEIEDEIDEEEEEARPAAAAQSASASSS
SDENGRNKRKRRRRRRGRGRENGEGTDTASFGGEQAGDEDVLDDDDADGEEGVEASQAQA
DDTSERRKRRRRGKRGGRRNRLEDGSVEAGAEEAEDAGGEADEAEEGVAVEVEVAEVTVA
AEEAPVEAVAEEPPAKPKRARRSRAKAAGEVATDEAARSEIEAQPVAAAPVEEVTPAEPE
VEVAAADLQEPAKPVRANRDLSKIASEPVVKSSTAKEAAPAEEAEKPKKGGWWQRRGFF
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcacgctgaagagacgcgcgtcgttgtcgta
cgcggaaaccgcatagaagaattcgacttcgaatccgaacacaagaaacagatccgcggc
aacatctaccttgccaaggtcacacgcgtcgaaccgtcgctccaggcggccttcgtcgac
tacggcggcaaccgccacggcttcctggccttcgccgaaatccatccggactactaccag
atcccgcttgccgaccgtcaggccctgctgagggccgaggccgaggaacatcgtcgcgac
gacgatatcgaaccggtcgagacggccaccgatctttccgaggatacggaaacggcggag
gttgccgaagccccggcggctgccgaagaggcgccggtcgccgcggccgcagaggcagag
gtcgaggttgtcgagaccgccgccgagcccgaggttgccgaagccgctgccgcccctgcg
gaagaggccccggccgaaaagccgaagaaaccgcgccgcccgcgcaaggccaaggcgaag
gccgaggacgcgccggctgccgaagaggccgccgcccccgccgaaagcggcgacgacgag
acacccggcggcgcgatggccatggctgtcgacaccgacgagatctccgagcccgccgag
cgctcgcgcggccgccgtcgccgcgatgacgacgacgatgacgacgatcatcacggcgag
gagaaggaagtcatcgaatccgtcggcgccgaagacgcgatggaagaggttccggaccgc
gtgcagcgcaagccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatc
ctgctcgtgcaggtcgccaaggaagagcgcggcaacaagggcgcggcgctgaccacgtac
ctgtcgctcgccgggcgctactccgtcctgatgccgaacacggcacgcggcggcggcatt
tcccgcaagatcaccaacctgcaggaccgcaagcgcctgaaggagatcgcccgcgacctc
gaggttccgcagggcatgggcgtcatcctgcgcaccgccggcgcgaaccgcacccgcgtc
gaggtcaagcgcgacttcgagtacctgatgcgcctgtgggagaacgtccgcacgctgacg
ctcgcctccacggccccctgcctcgtctatgaggaaggctcgctcatcaagcgctcgatc
cgcgacctctacaacaaggacatcagcgagatcatcgtcgccggcgaggaaggctatcgc
gaagcgaaaagcttcatgaagatgctgatgccgagccatgcgaaggtcgtgcagccctat
cgcgacgtgcatccgatcttctcgcgctcgggcatcgaggcccaactcgaccgcatgctg
cagccgcaggtgacgctgaaatccggcggctacatcatcatcaaccagaccgaggcgctc
gtctcgatcgacgtcaactccggtcgctcgacgcgcgagcactccatcgaggagaccgcg
ctccagacgaacctggaagccgccgaggaagtggcgcgccagcttcgcctgcgcgacctt
gccggcctcgtcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgcgccgtc
gagaagcgcctgaaggaccatctcaagaacgaccgcgcgcgcatccaggtcggccgcatc
tcgcatttcggccttctggaaatgtcgcgccagcgcatccgcgcctcggtcctcgaatcc
accatgcagacctgcccgcactgcaacggcacgggccatgtgcgctcgcagtcgtcggtc
gcgctgcatgtcctgcgcggcatcgaggaatatctgctcaagaacacgacgcacaacatc
accgtgcgcaccacgcccgacatcgcgctctacctgctcaaccacaagcgcggcacgatc
atcgactatgagggccgcttcggcgtcgccatcatcatcgaggcggatgcccatgtcggc
gcgcagcatttcgcgatcgaccgcggcgaggccgtcgagaacccggtcaagatcgagcag
atcctgcatttcgagcccgagcccgaagacgacgacatcgagatcgaagacgagatcgac
gaggaagaggaagaagcgcgtcccgctgcggctgcgcagtccgcctcggcgtcgtcctcc
tccgacgagaacggccgcaacaagcgcaagcgccgccgccgccgccgtggccgtggccgc
gagaatggcgaaggcaccgacaccgcctccttcggcggcgagcaggccggcgatgaagat
gtgctcgacgacgacgatgccgatggcgaagagggtgtggaagcatcccaggcacaggcc
gacgacacgtccgagcgccgtaagcgacgccgccgcggcaagcgtggcggccgccgcaac
cgtctcgaggacggttcggtcgaagccggcgcggaagaggccgaggacgccggtggcgag
gcagatgaagccgaagagggcgtggccgtcgaggtggaggtcgctgaagtgaccgtcgcc
gcggaggaagccccggtcgaggccgttgccgaagagccgccggccaagccgaagcgtgcc
cgccgcagccgtgccaaggccgccggagaggtcgccaccgacgaggctgcccgcagcgag
atcgaggcccaaccggtcgccgcggcccccgtcgaagaggtgacgccggccgagccggaa
gtcgaagtggccgccgccgatctccaggagccggccaagcccgtgcgcgccaaccgtgat
ctctccaagatcgcctccgagccggtggtgaaatcctcgacggcgaaggaagcggcgccg
gccgaggaagcggaaaagcccaagaagggcggctggtggcagcgccgcggcttcttctaa
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