Shinella sp. HZN7: shn_07455
Help
Entry
shn_07455 CDS
T04278
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
shn_07455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shz03021
]
shn_07455
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_07455
Enzymes [BR:
shz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
shn_07455
Transcription machinery [BR:
shz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
shn_07455
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
shn_07455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ANH03893
UniProt:
A0A1A9G0R0
LinkDB
All DBs
Position
1545774..1549985
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDVERVLYFENYIVTEPGLTALKENQLLSEEEYMIAVDEYGEDQFTA
MIGAEAIYEMLASMNLERIAGDLRSDLAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
NKVVTLHAKIRGRYKSVDGEGKAYSKIYETTPGRMIIGELLPKNGNIPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDTKAKIVGDTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPATGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTDKGLTMTAIVDAGQVVASIGTRVLGRT
ALDDIDHPVTGARIVDAGKMILEADVVEIEKAGIQSIRIRSALTCEIQTGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
MLRNSDGALVAMGRNMAITILDERGVERSAQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDVVDGISVLESTDESTGITKRSVIDWRSTPRGTDLKPAIVIKDKNG
AVAKLSRGGEARFLLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTVRFGRDYKNKRRVTIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDALIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDEMILDERRK
STGAGVATPMLADLAGGEGAAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgcaggtgcctgcgcagacgttcgattcc
atccggatctcgatcgcgtctccggaaaagattctttcctggtcgtacggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccatatcgagctggccgcgcccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcgcgacgctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tatttcgagaactacatcgtgaccgagccgggcctcaccgcgctcaaggaaaaccagctt
ctttccgaagaagaatacatgatcgccgtcgatgaatatggtgaagaccagttcacggcg
atgatcggcgccgaggccatctacgagatgctcgcctcgatgaacctcgagcggatcgct
ggcgacctgcgttcggatctggcggaaaccacgtcggatctgaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaatccggcaaccgtccggaatggatgatc
atgaaggtcgttccggtgatcccgccggacctgcgtccgctcgtcccgctggacggcggc
cgtttcgcgacgtcggacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgt
ctgaagcgcctcatcgagctgcgcgcgccgggcatcatcatccgcaacgagaagcgcatg
cttcaggaatcggttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggc
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctggaactcttcaag
ccgttcatctacgcccgcctcgacgccaagggtttctcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagcctgaggtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
ccgatcctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgtccacgttccgctttcgctggaagcccagctt
gaagcgcgcgtgctgatgatgtcgacgaacaacatcctgcatccggcgaacggcgcaccg
atcatcgttccctcgcaggacatggttctcggtctctactatttgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctccgacatgggcgaactgcaccatgcgctggaa
aacaaggtcgtcacgctgcacgcgaagatccgcggccgctacaagtcggtcgacggtgaa
ggcaaggcctacagcaagatctacgagacgacgcccggccgcatgatcatcggcgagctg
ctgccgaagaacggcaacatcccgttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcgcccacgcctgccgcgccggcatctcgttcggc
aaggacgacatggtcattccggacaccaaggcgaagatcgtcggtgacaccgaaaatctc
gtcaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctggggcaaggccaccgaaaaggtcgcggaagagatgatggcgcgc
atcaaggccgtcgaattcgaccccgcgaccggccgccagaagccgatgaactcgatctac
atgatgtcgcactccggcgcccgcggttctccgaaccagatgcgccagcttggcggcatg
cgcggcctcatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgaacgagtacttcaactcgacgcacggcgcccgcaagggtctg
gcggacaccgccttgaagaccgcgaactccggttacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcatgtcgactgcggcaccgacaagggcctcacgatgacg
gcgatcgtcgatgccggccaggtcgtggcttcgatcggcacccgcgttctcggccgtacg
gcgctcgacgatatcgatcatccggtcacgggtgcgcgcatcgtcgatgccggcaagatg
atcctcgaagcggacgtcgtcgagatcgagaaggctggcatccagtcgatccgtatccgt
tcggcgctgacctgcgagatccagaccggcgtctgcggcgtctgctacggtcgcgacctt
gcacgtggcacgcccgtcaacatgggcgaggccgtcggcgtcatcgcggcacagtcgatc
ggcgagccgggcacccagctcaccatgcgcaccttccacctgggcggcacggcgaccgtg
gtcgaccagtcgttcctggaagcctcgtatgaaggcacggtgcagatcaagaaccgcaac
atgctgcgcaattccgacggcgcactcgtcgcgatgggccgcaacatggcgatcaccatc
ctcgacgagcgcggcgtggaacgctccgcccagcgcgtcgcctacggttcgaagatcttc
gtcgacgacggcgacaaggtgaagcgcggccagcgtctcgccgagtgggacccctacacc
cgtccgatgatgacggaagtggaagggacggttcacttcgaagacgtcgtcgacggcatc
tcggtcctggaatcgacggacgaatccaccggcatcaccaagcgctcggtcatcgactgg
cgctcgacgccgcgcgggacggacctgaagccggccatcgtcatcaaggacaagaacggc
gccgtcgccaagctgtcccgcggtggcgaagcccgcttcctgctctcggtcgatgcgatc
ctctcggtcgagccgggccagaaggtctcccagggtgacgttcttgcccgctcgccgctg
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaggaccacgccatcatcgccgagatcgatggtaccgtccgcttcggc
cgcgactacaagaacaagcgtcgcgtgacgatcgagccggcggaagacggtgtcgagccg
gtcgagtacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgactacatcctcgacggcaacccggcgccgcacgacatcctggcgatcaagggc
gtggaagcactcgcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gtcgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgag
atcacggatgcaggtgacagcacctacatcgtcggcgacaatgtcgaccggatcgagctg
gaagacgtcaacgacgccctgatcgaggaaggcaagaagccggcctatggcgaaccggtc
cttctcggtatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcctcgttc
caggagaccaccaaggtcctcacggaagcggcgatcgccggcaagaccgacggcctgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatcccggccggcacgggcggcaccatg
acccagatccgccgcatcgcgacggcccgcgacgagatgatcctcgacgagcgccgcaag
tcgacaggcgccggcgtcgccaccccgatgctggcggacctcgccggcggcgagggtgca
gcagccgaataa
DBGET
integrated database retrieval system
