Shinella sp. HZN7: shn_08255
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Entry
shn_08255 CDS
T04278
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shz
Shinella sp. HZN7
Pathway
shz03410
Base excision repair
shz03430
Mismatch repair
shz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
shn_08255
03430 Mismatch repair
shn_08255
03440 Homologous recombination
shn_08255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_08255
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
shn_08255
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
shn_08255
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
shn_08255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ANH06648
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Position
1702643..1704445
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AA seq
600 aa
AA seq
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MLENADPVSRAFLNVERSVTGQRWVARLDQAGENRALAMSQSHGLPDLIARVLAGRGVPF
EGAVEFLDPTLRRLMPEPYSLMDCEAATERLALAIERRQRVAIFGDYDVDGASSSALLYR
FLAHFGVQAEIYIPDRIFEGYGPNPNAIAQLIERGAELIVTVDCGSTSHESLAVAKARGV
DVVVIDHHQVGEALPPAHALVNPNREDDLSGQGHLSAAGVVFLVLVALQRVMRERGDARA
KTFDLLAMLDLVALSTVCDVVPLKGLNRAYVVKGLVAARHLGNAGLTALLKQAGIGGPVT
PYHLGFLVGPRINAGGRIGDAALGSRLLTIDEPGEAERIAKQLDDLNRERQAMEAAMLAE
AEAEAQAEYGTGESASVILTAREGWHPGVVGLLASRLKDRFRRPAFAIAFDPSGKGTGSG
RSISGFDLGRMVRAAVEEGILVKGGGHAMAAGLTVEREKLGRLRAFFEERAERTVRDLVA
VETLKIDGALSAGGATLALADQLEQAGPYGSGHPQPIFALPAHRVRDVRPVGVNHLRLEL
EGPDGGRLGAMAFRAAEADLGLFLMQQRGQAVHIAGTLSADSWQGSRRIQFRVLDAAKAF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaaacgccgaccccgtcagccgggccttcctgaatgtcgagcgctcggtgacc
ggccagcgctgggtggcgcggctcgaccaggcgggggagaaccgggcgctggcaatgagc
cagagccatggcctgccggatctcatcgcgcgcgtgctggcggggcggggcgtgcccttc
gaaggcgccgtcgagttcctcgacccgacgctgcgccgcctgatgcccgaaccctacagc
ctgatggactgcgaggcggccacggagcggctggcgctggccatcgaaaggcgccagcgc
gtcgcgatcttcggcgactatgacgtcgacggcgcatcctcctcggcgctcctctatcgt
ttcctcgcgcatttcggcgtgcaggcggaaatctacatccccgaccgcatcttcgagggc
tatggcccgaaccccaacgccatcgcccagctcatcgagcgcggcgccgagctgatcgtc
acggtcgactgcggctcgaccagccacgaatcgcttgccgtggcgaaggcgcgcggcgtc
gacgtggtcgtcatcgaccaccaccaggtgggcgaggcgctgccgccggcccatgcgctg
gtcaatccgaaccgcgaggacgacctgtcggggcaggggcacctgtcggccgccggcgtc
gtcttcctcgtcctggtggcgctgcagcgcgtcatgcgggaaaggggcgatgcacgggcg
aagaccttcgatctcctcgccatgctcgacctcgtggcgctctccaccgtctgcgacgtc
gttcccctgaaggggctcaaccgcgcttatgtggtcaagggcctcgtcgccgcgcgccat
ctcggcaatgccgggctgacggcgctcctgaagcaggcgggcatcggcgggccggtgacg
ccctatcatctcggcttcctcgtcggcccgcgcatcaatgccggcgggcgcatcggcgat
gcggcgctcggcagccggcttttgacgatcgacgagccgggcgaggccgagcgaatcgca
aagcagctcgacgacctcaaccgcgagcgccaggccatggaggccgccatgctggccgag
gcggaggccgaggcgcaggcggaatacggcaccggcgaaagcgcctccgtcatcctgacg
gcccgcgagggctggcatccgggcgtcgtcggcctgctcgcctcgcgcctcaaggaccga
ttccgccggcccgccttcgccatcgccttcgatccctccggcaagggcaccggctccggc
cgctcgatcagcggcttcgatctcggccgcatggtgcgcgccgccgtggaggagggcatc
ctcgtcaagggcggcggccatgccatggcggcggggctgacggtggagcgggaaaagctc
ggccgtctgcgcgccttcttcgaagaacgcgccgagcggaccgtgcgcgacctggtggcc
gtggaaacgctgaagatcgacggggcgctgagcgccggcggcgcgacgctggcgctcgcc
gaccaactggagcaggccggcccttatggctccggccatccccagccgatcttcgcgctg
ccggcgcaccgggtgcgcgacgtcaggcccgtcggcgtcaatcacctgcgcctggagctc
gaagggcccgacggcgggcgcctcggcgccatggccttccgcgcggcggaagccgatctc
ggtcttttcctgatgcagcagcgcgggcaggcggtgcacatcgccggcacgctttccgcc
gatagctggcagggcagccggcgcatacagttccgcgttctggacgccgcaaaggcgttc
tga
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