Shinella sp. HZN7: shn_11160
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Entry
shn_11160 CDS
T04278
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03420
Nucleotide excision repair
shz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
shn_11160
03430 Mismatch repair
shn_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_11160
Enzymes [BR:
shz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
shn_11160
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
shn_11160
MMR (mismatch excision repair)
Other MMR factors
shn_11160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ANH06702
UniProt:
A0A1A9G6K9
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All DBs
Position
2316991..2319447
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AA seq
818 aa
AA seq
DB search
MISGYDDIPFFDEDPQLAGKPAAPAKPTGGIAARAMAARDAHRAPDYLSGLNPEQREAVE
TLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAFPSQMLAVTFTNKAAREMKERIGLLVG
GAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFSILDTDDVVRLIKQIIQAEGIDDKRWP
AKQFAGMIDTWKNKGLDPAQIPEGDARAFANGKGRELYVAYQNRLKTLNACDFGDLLLHP
IRLFRANPDVLAEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRPKGTPQNVCCVGDDDQS
IYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTAHILGAAGHLIAHNEDRLGKTLFTDR
HDPDDDKVVVHAAWDSEEEARAVGEEIEQLQRKAHKLNDMAILVRASFQMREFEDRFVTL
GLNYRVIGGPRFYERLEIRDAMAYFRLVSQPADDLAFERIVNTPKRGLGDTTIRNLHDYA
RARDIPMLAAAADIIETDELKPKARKALFDVVTDFRRWQSLLETMPHTELAEQILDESGY
TAMWQADKSAEAPGRLENLKELIRSMEAFESMRGFLEHVSLVMDAEQNENLDAVSIMTLH
SAKGLEFETVFLPGWEEGLFPHQRSLDEGGRSGLEEERRLAYVGITRAKRRCHIWFVSNR
RIHGLWQTTLPSRFLDELPEAHVEVAEVEQSYGGYGRGGYGQSRFDKQEPFQNAYSTPGW
RRAQANRTDATRDNWGSRSGHAVERIGYGESGPRAKTIDGELVAKSTVSEPSKFAVGDRV
FHIKFGNGNVAAIEGNKLTIDFDRAGQKRVLDGFVERA
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcggttacgacgacattcccttcttcgacgaggacccgcaactggccggcaag
cccgcggcgccggccaagccgacgggcggcatcgccgcgcgcgccatggcggcgcgcgat
gcgcaccgggcgccggattatctctccggcctcaaccccgagcagcgcgaggcggtggaa
acgctcgacggccccgtgctggtgctcgccggcgccggcaccggcaagacgcgcgtgctc
accacccgcatcgcccatatcctcgccaccggccgcgccttccccagccagatgctggcc
gtgaccttcaccaacaaggccgcgcgcgagatgaaggagcgcatcggcctcctcgtcggc
ggcgccgtcgagggcatgccctggctcggcaccttccattccatcggcgtcaagctttta
cgccgccatgccgaactcgtcggcctcaggtcggatttctccatcctcgacaccgacgac
gtggtgcggctgatcaagcagatcatccaggccgagggcatcgacgacaagcgctggccg
gccaagcagttcgccggcatgatcgacacctggaagaacaagggcctcgacccggcgcag
atcccggaaggcgacgcgcgcgccttcgccaacggcaagggccgcgaactctacgtcgcc
taccagaaccgcctgaagacgctgaacgcctgcgatttcggcgacctcctgctgcacccg
atccgcctgttccgcgccaatccggatgtgctcgccgaataccaccagaaattccgctac
atcctcgtcgacgaataccaggacaccaacaccgcgcagtacatgtggctgcgtcttctc
gcccagcggccgaagggcacgccgcagaacgtctgctgcgtcggcgacgacgaccagtcg
atctacggctggcgcggcgcggaggtggacaacatcctgcgcttcgagaaggatttcccg
ggcgccaaggtcatcaagctggagcgcaactaccgctccaccgcccatatcctcggcgcc
gccggccacctgatcgcccataacgaggatcgtctcggcaagacgctctttaccgaccgg
cacgatcccgacgacgacaaggtcgtggtgcacgccgcctgggattcggaggaagaggcc
cgcgccgtcggcgaggagatcgagcagctccagcgcaaggcgcacaagctgaacgacatg
gcgatcctcgtgcgcgcctccttccagatgcgcgaattcgaagaccgtttcgtcacgctc
gggctcaactaccgcgtcatcggcggcccgcgcttctacgagcggctcgagatccgcgac
gcgatggcctatttccgcctggtcagccagccggccgacgacctcgccttcgagcgcatc
gtcaacacgccgaagcgcggcctcggcgacacgacgatccgcaacctgcacgactatgcc
cgcgcccgcgacatccccatgctcgccgccgcggccgacatcatcgagacggacgaactg
aagccgaaggcgcgcaaggccctcttcgacgtcgtcaccgatttccgccgctggcagtcg
ctgctggagaccatgccgcacaccgagcttgccgagcagatcctcgacgagagcggctac
accgccatgtggcaggccgacaagtcggcggaggcgcccggccgcctcgaaaacctcaag
gaactcatccgctcgatggaagccttcgaatcgatgcgcggtttcctcgaacatgtctcg
ctcgtcatggatgccgagcagaacgagaatctcgacgccgtctcgatcatgacgctccat
tcggccaagggcctcgaattcgagaccgtcttcctgcccggctgggaggaaggcctgttc
ccgcaccagcgctcgctcgacgagggcggccgctcgggcctggaagaagaacgccgcctc
gcctatgtcggcatcacgcgggccaagcgacgctgccatatctggttcgtctcgaaccgt
cgcatccacggtctctggcagacgaccctgccctcgcgcttcctcgacgaactgccggaa
gcccatgtcgaggtggcggaggtggagcaatcctatggcggttacggccgcggcggctac
ggccagtcccgcttcgacaagcaggagcccttccagaacgcctattcgacgcccggctgg
cggcgtgcccaggcaaaccgcaccgacgcgacgcgcgacaactggggctcacgctccggc
cacgccgtcgagcgcatcggctatggggaaagcggcccgcgggcaaaaaccatcgacggc
gagctcgtggcgaaatcgaccgtgagcgagccgtcgaaatttgcggtcggcgaccgggtc
ttccacatcaagttcggcaacggcaacgtggcggcgatcgagggcaacaagctgaccatc
gatttcgaccgcgccggccagaagcgcgtgctggacggctttgtcgagcgagcctga
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