Shinella sp. HZN7: shn_11390
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Entry
shn_11390 CDS
T04278
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
shn_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shz03019
]
shn_11390
03009 Ribosome biogenesis [BR:
shz03009
]
shn_11390
Enzymes [BR:
shz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
shn_11390
Messenger RNA biogenesis [BR:
shz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
shn_11390
Ribosome biogenesis [BR:
shz03009
]
Prokaryotic type
rRNA helicases
shn_11390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ANH04581
LinkDB
All DBs
Position
2367605..2369548
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AA seq
647 aa
AA seq
DB search
MTSFEGLAPAMAKALEKRGYTTLTPVQVAVSDPKIGDADALVSAQTGSGKTVAFGLALAP
TLLQGEERFARAGNPLALVIAPTRELAMQVKRELEWLYEMTGAVIASCVGGMDVRNERRA
LERGAHIIVGTPGRLRDHITRGNLDLSEIRAVVLDEADEMLDLGFREDLEFILEAAPEER
RTLMFSATVSKEIATLAKNYQRDALRISTAAEREQHVDIDYRALLVVPADRENAIINVLR
YYDAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPNLELVVHADLPTNPETLLHRSGRTGRAGRKGVSALIVPLSARRKAERLL
QAANLKANWATPPSAEDILRRDDERLLADPMLTDTIGEDEIETIDALAARFDARQLAAAV
ARFFKAGHSAPEDLVEVSLEQRKPRERGNDFIPAETKRPREGFGSSVWISVSVGRKQRAE
PRWLIPMLCRNGSITKNEIGAIKMQPEETYIELSADAADGFLGHLGPNSMLERGIRVTVL
EGQPDLTPQPYTRTPGEKTQRYDRPERRADWKPKGDFDKKPRFEKKRDFDKPEGAAAKPH
WKDREDGGKKPAKPFAGAKPFKGKRDEKFAKPDGAPRKPKAKKPDRF
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacgagttttgaaggcctcgctccggcgatggcaaaggcgttggaaaaacgcggctat
accactttgacgccggtgcaggtcgccgtctccgaccccaagatcggcgatgcggatgcg
ctggtctccgcccagaccggctccggcaagaccgtcgccttcggcctcgcgctcgctccg
acgctgcttcagggcgaagagcgttttgcccgcgccgggaacccgcttgccctcgtcatc
gccccgacgcgcgaacttgccatgcaggtcaagcgcgagctggaatggctctacgagatg
accggcgccgtcatcgcctcctgcgtcggcggcatggacgtgcgcaacgagcggcgcgcg
ctggagcgcggcgcccatatcatcgtcggcacgccggggcgtctgcgcgaccacatcacc
cgcggcaatctcgatctgtccgagatccgcgccgtggtgctcgacgaagcggacgagatg
ctcgacctcggtttccgcgaagacctcgaattcatcctggaagccgcgccggaagagcgc
cgcacgctgatgttctcggccaccgtgtcgaaggagatcgccacgctcgccaagaactac
cagcgtgatgcgctgcgcatctcgaccgccgccgagcgcgaacagcatgtcgacatcgac
tatcgcgccctgctggtcgtgccggctgaccgcgagaacgccatcatcaacgtgctgcgc
tactacgatgcgcagaacgccatcgtcttctgttcgacgcgcgcggcggtgaaccacctg
accgcccgcttcaacaaccgcggcttctcggtcgtcgccctctccggcgaactcagccag
aacgaacgcacccacgcgctgcaggccatgcgcgacggccgcgcccgcgtctgcatcgcc
acggacgtcgccgcgcgcggcatcgacctgccgaatctcgaactggtcgtgcatgccgac
ctgccgaccaatccggaaacgctgctgcaccgctcgggccgcaccggccgcgccggtcgc
aagggcgtcagcgcgctcatcgtgccgctcagcgcccgccgcaaggccgagcgcctgctg
caggcggcgaacctcaaggccaactgggcgaccccgccgtccgccgaggacatcctgcgc
cgcgacgacgaacgcctgctcgccgacccgatgctgaccgatacgatcggcgaagacgag
atcgagacgatcgacgccctcgccgcacgcttcgatgcccgccagctcgccgccgccgtc
gcccgcttcttcaaggccggccactcggcgccggaagacctggtcgaggtctcgctcgag
cagcgcaagccgcgcgagcgtggcaacgacttcatcccggccgaaaccaagcgcccgcgc
gagggtttcggatcgagcgtgtggatctccgtctcggtcggccgcaagcagcgcgccgag
ccgcgctggctgatccccatgctctgccgcaacggcagcatcaccaagaacgagatcggc
gcgatcaagatgcagccggaggagacctatatcgaactctccgccgatgccgccgacggc
ttcctcggccatctcggcccgaacagcatgctggagcgcggcatccgcgtcaccgtgctg
gagggccagcccgacctgacgccgcagccctatacgcgcacgcccggcgagaagacgcag
cgctacgaccggccggaacgccgtgccgactggaagccgaagggcgacttcgacaagaag
ccgcgtttcgagaagaagcgcgatttcgacaagcccgaaggcgccgccgccaagccgcac
tggaaggaccgcgaggacggcggcaagaagccggccaagccgtttgccggcgccaaaccc
ttcaagggcaagcgcgacgagaagttcgccaagcccgacggcgccccgcgcaagccgaag
gccaagaagccggaccgcttctga
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