Shinella sp. HZN7: shn_15875
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Entry
shn_15875 CDS
T04278
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
shn_15875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_15875
Enzymes [BR:
shz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
shn_15875
DNA repair and recombination proteins [BR:
shz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
shn_15875
Prokaryotic type
shn_15875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ANH05366
LinkDB
All DBs
Position
complement(3291439..3292134)
Genome browser
AA seq
231 aa
AA seq
DB search
MAAGEVKVGESWKAPLAAEFSSPYMADLKAFLLEQKQAGRRIFPKGSEYFRALDLTPLEE
VRVVILGQDPYHGEGQAHGLCFSVQPGVRIPPSLVNIYKEMQDDLGIPPVRHGFLEHWAK
QGVLLLNSVLTVEMGRAASHQGRGWERFTDAVIRAVNEQEKPVVFILWGSYAQKKAAFVD
RDRHLVLRSAHPSPLSAHNGFFGSRPFSKANAFLEKHGRKPIDWQLPGTPG
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgggcgaagtgaaggtcggggaaagctggaaggcgcccctggcggcggaattc
tccagcccctacatggccgacctcaaggccttcctcctggagcagaagcaggcgggacgg
cgcatcttcccgaaaggctcggaatatttccgcgccctcgacctgacgcctctggaggag
gtgcgtgtcgtcatcctcgggcaggatccctatcacggcgaggggcaggcgcacgggctc
tgcttttccgtgcagcccggcgtgcgcatcccgccgtcgctggtcaacatctacaaggaa
atgcaggacgatctcggcatcccgccggtccgtcatggcttcctggagcactgggccaag
cagggcgtcctgcttttgaacagcgtgctgacggtggagatgggccgcgccgcctcgcac
cagggccgcggctgggagcggttcaccgacgcggtcatccgcgccgtcaacgagcaggaa
aagcccgtcgtcttcatcctctggggctcctatgcgcagaagaaggcggccttcgtcgat
cgggaccgccatctcgtgctgcgctcggcccatccctcgccgctttccgcccataacggc
ttcttcggctcgcggccgttttccaaggcgaacgcgtttctcgaaaagcacggccgcaag
ccgatcgactggcaattgccgggcacgccgggctga
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