Shinella sp. HZN7: shn_18870
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Entry
shn_18870 CDS
T04278
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
shn_18870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_18870
Enzymes [BR:
shz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
shn_18870
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
shn_18870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ANH05897
LinkDB
All DBs
Position
complement(3902074..3902880)
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AA seq
268 aa
AA seq
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MALSIATWNINSVRLRMPLVEHFLKTFSPDILCLQETKCPNDLFPSKPLKALGYEHIVMH
GQKGYHGVATISRLPLTELVERRDYCGVGDARHVSVLFHHRNKSIRLHNFYVPAGGDEPD
RTINPKFGHKLDFIEEMKLLHAEAEAGISSILVGDLNIAPLEHDVWSHKQLLKIVSHTPI
ETEGLIDVMTKGAWVDLMRRKVPAHEKLYTWWSYRSADWVAANKGRRLDHIWSSADLEPH
LSNIAVIREARGWERPSDHVPVIAEFDF
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcactttcgattgcgacctggaacatcaactccgtgcggctgcgcatgccgctcgtc
gagcatttcctgaagaccttctcgccggacatcctgtgcctgcaggaaaccaagtgtccg
aacgatctctttccgtccaagccgctgaaggcgctgggctacgagcatatcgtcatgcac
ggccagaagggctatcacggtgtcgccaccatctcccgcctgccgctgaccgaactcgtc
gagcggcgcgactattgcggcgtcggcgatgcgcgccatgtctcggtgctcttccaccat
cggaacaaatcgatccgcctgcacaatttctatgtgcccgccggcggcgacgagccggac
cgcacgatcaatccgaaattcggccacaagctggatttcatcgaggagatgaagctgctg
cacgccgaggccgaggccggcatttcctcgatcctcgtcggcgacctcaacatcgccccg
ctggagcacgacgtctggtcgcacaagcagctcctcaagatcgtcagccacacgccgatc
gagacggaaggcctcatcgacgtcatgaccaagggcgcctgggtcgacctcatgcgccgc
aaggtgccggcccatgaaaagctctatacgtggtggagctaccgctcggccgactgggtc
gccgccaacaaggggcgccgcctcgatcatatctggtcctccgccgacctcgagccgcat
ctcagcaacatcgcggtgatccgcgaggcgcggggctgggaacggccgtccgaccatgtg
ccggtgattgcggagttcgatttttaa
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