Shinella sp. HZN7: shn_19930
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Entry
shn_19930 CDS
T04278
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shz
Shinella sp. HZN7
Pathway
shz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
shn_19930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shz03021
]
shn_19930
03019 Messenger RNA biogenesis [BR:
shz03019
]
shn_19930
Transcription machinery [BR:
shz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
shn_19930
Messenger RNA biogenesis [BR:
shz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
shn_19930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
DUF6360
AAA
Spore_III_AA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ANH06874
UniProt:
A0A1A9G7I2
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All DBs
Position
complement(4151699..4152955)
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AA seq
418 aa
AA seq
DB search
MKLQDLKNKTPTDLLAFAESLEVENASTMRKQELMFAILKMLAAQDVEIIGEGVVEVLQD
GFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTIN
FDDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSPRVIDLVAPLGKGQRGLIVAPP
RTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDI
LKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaagctacaagacctcaagaacaagactccgaccgacctgcttgcctttgccgaatcg
cttgaggtcgaaaacgcgagcacgatgcgcaagcaggaactgatgtttgcgatcctgaag
atgctggccgcgcaggacgtggaaatcatcggcgagggtgtcgtggaagtgctgcaggac
ggtttcggcttcctgcgttcggccaatgcgaactatctgccaggccccgacgatatctac
atttcgccctcccagatccgccgcttctcgctgaagaccggcgatacggtggaaggcccg
atccgtggcccgaaggaaggcgagcgctatttcgctctgctcaaggtcaatacgatcaat
ttcgacgacccggagaagatccgtcacaaggtccacttcgacaacctgacgccgctctac
ccgaacgagcgcttcaagatggaactcgagatcccgacctcgaaggatctttctccgcgc
gtcatcgatctcgtcgcaccgctcggcaagggccagcgcggcctcatcgtcgccccgccg
cgaacgggtaagacggttctcctgcagaacattgcccattcgatcaccgccaaccatccg
gaatgttacctcatcgtcctcttgatcgacgagcgtccggaggaagtgacggacatgcag
cggtcggtgcggggcgaagtcgtttcctcgaccttcgacgagccggcgacgcgccacgtc
caggtcgccgaaatggtcatcgagaaggccaagcgcctcgtcgagcatggccgggacgtc
gtcatcctgctcgattcgatcacccgcctcggccgggcctacaacacggtcgttccgtcg
tcgggcaaggtcctgaccggcggcgtcgacgcgaacgccctgcagcgcccgaagcgtttc
ttcggcgcggcgcgcaacatcgaggaaggtggttcgctgacgatcattgcgacggcgctg
atcgacaccggcagccgtatggacgaagtgatcttcgaggaattcaagggtaccggtaac
tcggaaatcgtgctggaccgcaaggtcgccgacaagcgcatcttcccggccatggatatc
ctcaagtccggcacgcgcaaggaagaccttctggtgccgcggcaggatctccagaagatc
ttcgttctgcggcgcatccttgccccgatgggcaccacggatgcgatcgagttcctcatc
gacaagctgaagcagacgaagaacaacggcgatttcttcgattcgatgaacacataa
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