Shinella sp. HZN7: shn_20110
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Entry
shn_20110 CDS
T04278
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
shz
Shinella sp. HZN7
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_20110
Enzymes [BR:
shz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
shn_20110
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
shn_20110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
DUF6086
Motif
Other DBs
NCBI-ProteinID:
ANH06114
UniProt:
A0A1A9G5E4
LinkDB
All DBs
Position
complement(4188670..4191852)
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AA seq
1060 aa
AA seq
DB search
MTRARGRIYSIPASLPFLRTTAQSLVDGRLVPGFTYDPADPLALADVTIYVPTRRSARVL
RSEFVDLFGGRSAILPVIRALGETEDDSGFFDEAAPALLDMAEPLSGPARLLELARLVLA
WRNQLPAAVTSVHAESPLVAPASPADAVWLARNLAEIIDAMETEELDWLALDNLDVSNHA
LWWQLTAEFLKIASEFWPARLTELNRSSPSLRRNATLHAETERYRAMPPAGPVIIAGSTG
SIPATAGLIAAVADLPNGVVILPGLDRFMSDAEWLLVGHQAGGDGAPKPDAAARSHPQYG
LHRLLARMGCTRADVELLGTPPEALEYRSQVLSSAFLPTQATAGWGEVRGTLDAGRLAEA
FEAVSLVEAANEREEAVAIAIALRLALEDGEDAQAALITPDRKLGRRVAAELARFGIEAD
DSAGTPLLSTPQGTLLRLLTEAALRPGDPVPLVALLKHPLARFGLPVADLAEAVTALELT
ALRGGTAEIDISTLEPLLEAALARQAQDRHPPEWRMALSEAAIPLARDLARRIAEAVEPL
AGALVQESRTGRRFSSKLAVSDWSERTGRALEAVAVDEHGNLAALWSGEAGDSLANLFKS
VIETDGQIEADGPQWCDIIEALAASESVKPRSMRHPRVFIFGALESRLQSVDTVVIGGLN
EGTWPGQAANDAFLSRIMKVEIGLEPPERRIGQLGHDLQMAAAAPKLVLTRALRNGTAPT
VASRWLQRLIAVGGPTLAADLKARGRNLIDWANAIDRSPPVPNARRPAPHPPAELQPRKY
SFSEVGRLRRDPYAIYARHILRLDPIAPFNLDPGPAERGSLYHRIVDRFVREEASGEPLT
LIGRILAEEFDAVALPPHIDAVWRPRFAAVARAFVHWHLERAGGVRESLTEVPASLDLSV
GGIRLTGIADRIDILPDGSADLLDYKTGSTPSMRVARALLDPQLALEAAAIRRGAFRRAG
IREPANLLYVRLKPGERFKAEQVNNEHAKSANVTPKSAVELAEEALTELEKLLTGLIEGR
YGFASRLIPEQERDYGGEYDHLARVAEWSSAESNGEGEDA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcgggcgcgcgggcgcatctattccatcccggcgagcctgcccttcctgaggacg
actgcccagagccttgtcgacggccggctcgtgcccggcttcacctatgaccccgccgac
ccgctggcgctggccgacgtgacgatctacgtgccgacccgccgctccgcccgcgtgctg
cgctcggaattcgtcgatctcttcggcgggcgctcggccatcctgccggtcatccgcgcg
ctcggcgagacggaagacgacagcggcttcttcgacgaggcagcgccggcgctgctggac
atggccgagccgctgtccggcccggcgcgccttctcgaactcgcccgcctcgtgctcgcc
tggcgcaaccaactgcccgcggcggtcacctccgtgcatgcggaaagcccgctcgtcgcg
cccgcgagccccgccgatgccgtctggcttgcccgcaacctcgccgaaatcatcgacgcg
atggagacggaagagctcgactggctggcgctcgacaatctcgacgtctccaaccatgcg
ctctggtggcagctcaccgccgaattcctgaagatcgccagcgaattctggccggcgcgg
ctgacggagctcaaccgctcctccccgtcgctgcggcgcaacgcgacgctgcatgccgag
acggaacgctaccgcgccatgccgcctgccggccccgtcatcatcgccggctcgacgggc
tccattcccgcgaccgccggcctgatcgcggctgtggcggacctgcccaacggcgtcgtc
atcctgccggggctcgatcgtttcatgtcagatgccgaatggctgctggtcggccaccag
gccggcggcgacggcgccccgaagcccgatgccgcagcccgcagccatccgcaatacggc
ctccaccgcctgcttgcccgcatgggctgcacgcgcgcggatgtcgaattgctcggaacg
ccgcccgaagcgctggaatatcgctcgcaggtcctctccagtgccttcctgccgacgcag
gcgacggccggctggggtgaggttcgcggcacgctcgatgcgggccgcctcgccgaggcc
ttcgaggccgtgtcgctcgtcgaggcagccaacgagcgggaagaagcggtggcgatcgcc
attgccctgcgcctggcgctggaggatggcgaggacgcccaggcggcgctgatcacgccc
gaccgcaagctcggccggcgcgtggcggcggagcttgcccgcttcggcatcgaggcggac
gattcggccggcacgcccttgctctccacgccgcagggcacgctcctgcgtctcctcacc
gaggcggcgctgcggccgggcgacccggtgccgctcgtcgcgctgctgaaacacccgctc
gcccgcttcggcctgcccgtggcggaccttgccgaggccgtcaccgcgctggagctgacg
gcgctgcgcggcggcacggccgagatcgacatttccacgctcgaaccgctgctcgaggcc
gcccttgcccggcaggcgcaggatcgccacccgccggaatggcgcatggcgctttccgag
gccgcaatcccgcttgcccgcgacctcgcccgccgtatcgcagaagccgtcgagccgctt
gccggcgcgctcgtgcaggaaagccgcacgggccggcgcttctcctcaaagcttgcggtc
tccgactggtcggaacggaccggccgcgcgctcgaagccgtggcggtggacgagcacggc
aaccttgccgccctctggtccggcgaggccggcgacagcctggcgaacctcttcaagagc
gtgatcgagacggacgggcagatcgaggccgacgggccgcaatggtgcgacatcatcgag
gcactggcggccagcgaaagcgtcaagccgcgctccatgcgccatccgcgcgtcttcatc
ttcggcgcgctcgaatcgcgcctgcagagcgtcgacactgtggtgatcggcgggctcaac
gaaggcacctggccggggcaggcggcgaacgacgccttcctgtcgcgcatcatgaaggtg
gagatcggcctggagccaccggaacggcgcatcggccagctcggccacgacctgcagatg
gccgctgccgcaccgaaactggtgctgacgcgggcgctgcgcaacggcaccgcgccgacc
gtcgcctcgcgttggctgcagcggctcatcgccgtcggcggccccacccttgccgccgac
ctcaaggcgcgcggaaggaacctcatcgactgggcgaacgccatcgaccgcagcccgccc
gtgccgaatgcccgccgcccggcgccgcatccgccggccgagctgcagccgaggaaatac
tccttcagcgaggtggggcgtctccggcgcgatccctatgcgatctatgcccgccatatc
ctgcgcctcgatccgatcgcacccttcaatctcgatcccgggccggccgagcgcggctcg
ctctaccaccgcatcgtcgaccgcttcgtgcgcgaagaggcgagcggcgagccccttacc
ctcatcggccgcatccttgcggaagaattcgacgccgtcgccctgcccccgcatatcgac
gccgtctggcggccgcgctttgccgccgtcgcccgcgccttcgtccactggcacctggag
cgggcgggtggcgtgcgcgagagcctgacggaggtgccggcctcgctcgacctgtcggtc
ggcggcatccgcctgaccggcattgccgaccgcatcgacatcctgccggacggcagcgcc
gaccttctcgactacaagaccggcagcacgccctcgatgagggtggcgcgggcgttgctc
gacccgcagctcgcgctggaggcggcggcgatccggcgcggcgccttccgccgggccgga
attcgcgagccggcaaaccttctctatgtgcgccttaaacccggcgaacggttcaaggcc
gaacaggtgaacaacgagcatgccaaatcggcgaacgtcacgccgaaatccgccgtcgag
cttgccgaggaagccctgacggagctggaaaagctgctgacgggcctcatcgagggccgc
tacggctttgcctcccggctcattcccgaacaggaacgggactatggcggggaatacgac
cacctcgcgcgcgtcgccgaatggtcctcggcggaaagcaacggggagggcgaggatgct
tga
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