Shinella sp. HZN7: shn_21650
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Entry
shn_21650 CDS
T04278
Name
(GenBank) pca operon transcription factor PcaQ
KO
K02623
LysR family transcriptional regulator, pca operon transcriptional activator
Organism
shz
Shinella sp. HZN7
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shz03000
]
shn_21650
Transcription factors [BR:
shz03000
]
Prokaryotic type
Helix-turn-helix
LysR family
shn_21650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
SBP_bac_3
Fe_dep_repress
HTH_30
HTH_23
MarR
OpuAC
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ANH06898
UniProt:
A0A1A9G8L4
LinkDB
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Position
complement(4517793..4518716)
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AA seq
307 aa
AA seq
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MIDSRIKFRHLQTFVEVARQRSVMKAAEILHVSQPAVTKTIRELEEVLGVAVFEREGRGI
KITRHGEVFLKHAGAVLAALRQGFDSVSQALSGDAPPIRIGALPTVSTRIMPKAMALFLA
EETGARIKIVTGENAVLLEQLRVGDLDLVVGRLAAPEKMAGFSFEHLYSEKVVFCVRAGH
PLLAGGSAFAGLDAYPVLMPTRASIIRPFVESFLIANGIAGLPNQIETVSDAFGRAFVRE
SDAIWIISEGVVAADIADGALAALPIDTSGTKGPVGLTMRTDAVPSMPLSILIQTIREVA
GKVSPAA
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacagccgcatcaagttccgccatctacagacctttgtcgaggtggcccgccag
agaagcgtgatgaaggcggcggagatcctgcatgtcagccagcccgccgtgacgaagacg
atccgcgagctggaggaggttctcggcgtcgccgtcttcgagcgcgaggggcgcggcatc
aagatcacccggcatggcgaggtcttcctcaagcatgccggcgcggtgctggcggcgctc
cggcagggcttcgattcggtctcgcaggcgctttccggcgatgccccgccgatccgcatc
ggcgccctgccgaccgtctccacgcgcatcatgccgaaggcgatggcactgttcctcgcg
gaggagacgggcgcgcgcatcaagatcgtcacgggcgagaatgcggttctcctggaacaa
ctgcgcgtcggggacctcgacctcgtcgtcgggcgccttgccgcgccggagaagatggcc
ggcttctccttcgaacatctctattcggaaaaggtggtcttctgcgtgcgcgccggccat
ccgctgcttgccggcggctcggcctttgccgggctcgacgcctatcccgtgctgatgccg
acgcgcgcctcgatcatccggcccttcgtcgaaagcttcctgatcgccaacggcatcgcg
ggccttccgaaccagatcgagaccgtgtccgacgccttcggccgcgccttcgtgcgcgag
agcgatgcgatctggatcatctccgaaggggtcgtggcggcggatatcgccgatggcgcg
ctcgcggccctgccgatcgacacgagcggcacgaagggccctgtcggcctcaccatgcgc
accgacgccgtgccgtccatgccgctgtcgatcctcatccagaccatccgcgaggtggca
ggcaaggtatcgcccgcggcttga
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