Shinella sp. HZN7: shn_22390
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Entry
shn_22390 CDS
T04278
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
shn_22390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_22390
Enzymes [BR:
shz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
shn_22390
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
shn_22390
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
shn_22390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ANH06914
UniProt:
A0A1A9G7M3
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All DBs
Position
4675590..4676471
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLAPVMEGATIRRAELRRPDLRFPFPPAFSEALSGRRVVSLGRRAKYL
LIDIEGGDVVIAHLGMSGSFRVEGAEPPGDFHIPRSKDARHDHVVFHLETPEGERRVIYN
DPRRFGFMDLARREDLAAHAFFRDLGAEPTGNTLDADYIAAKFRGRQTPLKAALLDQKNI
AGLGNIYVCEALWRAHLSPERLAGTLVTAAGRPKKELVLLTEAIRQVIADAIEAGGSTLR
DHIRADGSLGYFQHSFFVYDREKEPCRTPGCTGTIGRIVQSGRSTFHCAACQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaagtggaaacggtgcgccggggccttgcccccgtcatggagggg
gcgacaatccgccgggcggagctgcgccgtccggacctgcgctttcccttcccgcccgcc
ttttccgaggctttgtccggccgccgcgtcgtctcgctcggccgccgcgccaaatatctg
ctgatcgatatcgagggcggcgacgtggtgatcgcccatctcggcatgtccggctccttc
cgggtggagggcgccgagccgcccggcgacttccacattccccgcagcaaggacgcgcgc
cacgaccatgtcgtcttccacctggaaacgcccgagggcgagcgccgcgtcatctacaac
gatccccgccgcttcggcttcatggatcttgcccggcgggaggacctcgccgcccatgcc
ttcttccgcgatctcggtgccgaaccgaccggcaacacgctggacgccgactatatcgcc
gccaagttccgcggccgccagacgccgctgaaggccgccctgctcgaccagaagaacatt
gccggcctcggcaacatctatgtctgcgaggcgctgtggcgcgcgcatctttcgccggaa
cggctggccggcacgctggtcacggccgcgggcaggccgaagaaggagctcgtcctcctc
accgaggcgatccgccaggtgatcgccgatgcgatcgaggcgggcggctcgaccctgcgc
gaccatatccgcgccgacggctcgctcggctacttccagcattccttcttcgtctacgac
cgcgagaaggagccttgccgcacgcccggctgcacgggcacgatcggccgcatcgtgcag
agcggccgttccaccttccattgcgccgcctgccagaaataa
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