Shinella sp. HZN7: shn_27800
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Entry
shn_27800 CDS
T04278
Name
(GenBank) ABC transporter ATP-binding protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
shz
Shinella sp. HZN7
Pathway
shz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
shn_27800
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shz02000
]
shn_27800
Transporters [BR:
shz02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
shn_27800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
TOBE_2
AAA_21
AAA_30
nSTAND3
AAA_16
AAA_29
nSTAND_NTPase5
NACHT
ABC_ATPase
RsgA_GTPase
ORC-CDC6-like
AAA
AAA_22
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ANH07950
LinkDB
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Position
pShin-03:127693..128766
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AA seq
357 aa
AA seq
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MSAVLQLKNVHKAFAGVPALAGVDAALMDNSYVSLLGPSGSGKTTLLRVIAGFEQPDGGE
ILFAGRRIDGVPPHERGIGFVFQNFALFPHLSVAQNIAFGLENRAVAPVTDAKAVTARVR
DMIGLVGLTGLEDRAVTQISGGQKQRVALARTLVTEPSMVLLDEPLGALDANLRTRMRGE
LRTIRERCGVTFLHVTGSETEALAMGDTVLVLDRGRIAQATDAGTLYSRPASADVARFLN
CYNIFSGAVSGDVFESPVGRLALGGVRQASGRPAYAIRYDRVAIRPRDAAAAGDEVRIEA
SFVASEYSGAAINSFFTLDDGRVFEVETHLSHAAPEAFEEKARYALVWKREDALVFV
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagccgtcctccaattgaagaatgtgcacaaggcctttgccggcgtgccggcactt
gcgggcgtcgatgcggcgctcatggacaattcctatgtctcgctgctcgggccgtcgggc
tcgggcaagacgacgctgttgcgcgtcatcgccggcttcgagcagccggacggcggggag
atcctctttgccggcaggcgcatcgacggcgtgccgccgcatgagcgcggcatcggcttc
gtcttccagaatttcgcgctctttccgcatctgagcgtcgcgcagaacatcgccttcggc
ctcgaaaaccgcgccgtcgccccggtgacggacgcgaaggccgtcaccgcccgggtgcgc
gacatgatcggcctcgtcgggctcacgggcctcgaagaccgcgccgtcacgcagatctcc
ggcggccagaagcagcgcgtggcgctcgcccgcacgctggtgacggagccgagcatggtg
ctgctcgacgagccgctcggcgcgctcgacgccaacctgcgcacgcgcatgcgcggggag
ctccgcaccatccgcgagcgctgcggcgtcaccttcctccacgtcaccggctcggagacc
gaggcgctcgccatgggcgacaccgtgctggtgctcgatcgcggccgcatcgcgcaagcg
acggatgccggcacgctctacagccgcccggcctccgccgacgtcgcgcgtttcctcaat
tgctacaacatcttttccggcgcggtctcgggcgatgtcttcgagagccccgtcggccgc
cttgcgctcggcggcgtgcgccaggcatccggcaggccggcctacgccatccgctacgac
cgtgttgcgatccgcccgagagatgcggcggccgctggcgacgaggtgcgcatcgaggcg
agcttcgtcgccagcgagtattccggcgccgcgatcaactccttcttcacactcgacgac
ggccgcgtcttcgaggtggagacgcatctcagccatgccgcgcccgaggccttcgaggag
aaggcccgctacgccctcgtctggaaacgggaggacgcccttgtcttcgtttga
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