Shinella sp. HZN7: shn_31395
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Entry
shn_31395 CDS
T04278
Name
(GenBank) hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03030
DNA replication
shz03430
Mismatch repair
shz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
shn_31395
03430 Mismatch repair
shn_31395
03440 Homologous recombination
shn_31395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shz03032
]
shn_31395
03400 DNA repair and recombination proteins [BR:
shz03400
]
shn_31395
Enzymes [BR:
shz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
shn_31395
DNA replication proteins [BR:
shz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
shn_31395
DNA repair and recombination proteins [BR:
shz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
shn_31395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_4
DinB_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
ANH08648
UniProt:
A0A1A9GDM8
LinkDB
All DBs
Position
pShin-06:94581..96266
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AA seq
561 aa
AA seq
DB search
MRVGIRGRVLIFFVALAAGSMAILALGIGFGYHREKVATVHNAVTQAAIAIGFGLSALIC
WAWFLFDRYFARPIKGITAAMHARTHADVTNDLLIMDAEHLGELSVAASTAIATLNRARS
DLAETIARETSRLLADRSKLEQMLSDVPPAVLLCTGRHHVAFYNSVAQQLLGTRYTPVCL
DRSLFDYLGDHEIRHAHKRLLERDTPDAVLEFVCVSGARRLAGRMRLAGDNDGDAGAYVM
TLRDVTEEVAAFARRDALLRDVFTALRPMIGTPGSPAGDGSLRETGAIWNWEELEHRYQA
CEADGWPTTLAGALNSVAQTFEPFPSPAATLPRTVVYDFDLLSRVSRDVVADAELDDLNY
VVFDTETTGLLPERGDELVQIAAVRIVNGKLMPGEVFDTFVNPGRPIPPASTAIHRVTDA
MVAEAPDVLHAVERFHKFVGNCVLVAHNAPFDMAFLHRREKALGIQFDNPVLDTGIISVM
TFGQHESHTLDALASRLAISIPAMQRHTALGDAVATAEVFLKLKGILMGRGITRFGDLVA
HMRQNRTLSDGHRIVEGVRKP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgtgggcattcgcggacgggtactgattttcttcgtcgccctggcggcgggcagc
atggctatcctcgcgctcggcatcgggttcggctatcatcgcgagaaggtcgcgaccgtc
cacaatgcggtcacgcaggccgccatcgccatcggcttcgggctttccgccctgatctgc
tgggcgtggttcctgttcgatcgatatttcgcgcgaccgataaaagggatcacggcggcc
atgcatgcacgcacgcatgcggacgtgaccaacgaccttcttatcatggacgcggaacac
ctgggtgaactgtccgtggcggcttcaaccgccattgcaacattgaaccgggcgcgaagt
gaccttgccgagaccatcgcacgagaaacgtcgaggctccttgccgacaggagcaagctg
gagcagatgctgtccgacgtcccgccagccgtcctcctgtgcaccggacgccaccatgtg
gccttctataacagcgtcgcccagcagttgctcggcacgcgctacacgccggtctgcctc
gaccgcagcctgttcgactatctcggcgaccacgagatacgccacgcccataagcgcctg
ctggaacgagacacgcccgacgccgtcctcgaattcgtctgcgtgagcggcgcgcggcgg
ctcgcgggccgtatgcgtctggccggtgacaacgacggggacgcgggcgcctatgtcatg
accttgcgcgacgtgacggaagaggttgccgccttcgcccggcgcgatgcgctcttgcgc
gacgtgttcacggcactgcgtccaatgatcggaacgcccggctctccagccggcgacggc
agcctaagagaaaccggggcgatctggaactgggaggaactggagcatcggtatcaggcg
tgcgaggcggacggctggccgacgacattggccggcgcgctgaacagcgtggcgcagacc
ttcgagccgttcccctcgcccgccgcgaccttgccgcgaacggtcgtctatgatttcgac
ctgctttcccgtgtaagccgggacgtcgtcgccgacgcggaactcgacgacctcaactat
gtcgtcttcgataccgaaacgacgggccttcttcctgaacggggcgacgagctggttcag
attgctgcagtgcggattgtgaacggcaagctcatgccgggcgaggtcttcgatacgttc
gtcaatccaggacgccctattccaccagcgtcgacggcgatccaccgggtgacggatgcc
atggtcgccgaagcgccggatgtccttcacgccgtggaacgattccacaaattcgtcggg
aactgcgtgctcgtcgcccataatgcgccgttcgacatggcgtttctccatcggcgtgaa
aaggcgctaggcatccagttcgacaacccggttctcgataccggcattatctctgtcatg
actttcgggcagcatgagagccacacgctggacgccttggcgagccgcctcgccatatcc
ataccggcgatgcagcgccacacggccctgggcgacgccgtagcgacggcagaggtcttc
ctcaagctcaaagggatattgatgggccgggggataacaaggtttggggatctcgtcgcg
catatgaggcagaaccgcacgctttccgatggtcatcgcatagttgaaggagttcgcaaa
ccttaa
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