Saccharolobus islandicus M.14.25: M1425_1405
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Entry
M1425_1405 CDS
T00890
Name
(GenBank) KH type 1 domain protein
KO
K03679
exosome complex component RRP4
Organism
sia
Saccharolobus islandicus M.14.25
Pathway
sia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1425_1405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sia03019
]
M1425_1405
Messenger RNA biogenesis [BR:
sia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
M1425_1405
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
M1425_1405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
RRP40_S1
S1
KH_1
PIMT_C
Motif
Other DBs
NCBI-ProteinID:
ACP38158
UniProt:
C3MVG3
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All DBs
Position
1325524..1326267
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AA seq
247 aa
AA seq
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MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacaaccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactctacagttgttggactttttgatgtaaaagatactcagtttgaagtgattccg
ttggaaggttcgttttactatcctaaggtcaatgatgtggtaataggtttagtggaggac
gttgaaatctatggttgggtggttgacataaaatcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactatgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtgaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgtatgagactttgacctcaaaaagt
ggatgcagtatgtttgttgccaataatggtagaatatgggctacttgtccttcccgcttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga
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