Saccharolobus islandicus M.14.25: M1425_1407
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Entry
M1425_1407 CDS
T00890
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
sia
Saccharolobus islandicus M.14.25
Pathway
sia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1425_1407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sia03019
]
M1425_1407
Messenger RNA biogenesis [BR:
sia03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
M1425_1407
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
M1425_1407
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
Motif
Other DBs
NCBI-ProteinID:
ACP38160
UniProt:
C3MVG5
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All DBs
Position
1326973..1327800
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AA seq
275 aa
AA seq
DB search
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGF
RVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccatcgaatcaaaatattatacctttaatcaagaaggaaagtatagta
agtctttttgagaaaggcactaggcaagacggaagaaaattaacggattatagacctctt
tctataaccctggattatgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttatgaagatacgcctaac
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgacgtttacgtattagactatggtgggaatgtattggatgcatgtacgttggcc
tcagttgcagcattgcataatactaaagtgtataaggtagaacaagattctaatgggttt
agagtcaataaaaatgaagttgtgggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaagttgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggacactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
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