Streptococcus intermedius B196: SIR_0249
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Entry
SIR_0249 CDS
T02830
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SIR_0249 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sib03400
]
SIR_0249 (recD)
Enzymes [BR:
sib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SIR_0249 (recD)
DNA repair and recombination proteins [BR:
sib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SIR_0249 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
UvrD-helicase
DEAD
UvrD_C
HHH_5
PhoH
Herpes_Helicase
nSTAND3
RsgA_GTPase
AAA_12
AAA_22
AAA_28
Rad17
5_3_exonuc
AAA_29
NPHP3_N
SLFN-g3_helicase
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGU75638
UniProt:
T1ZCI9
LinkDB
All DBs
Position
complement(238025..240379)
Genome browser
AA seq
784 aa
AA seq
DB search
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGN
LVQHPKYGEQLKLIRYERAKPTSKGLIKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLA
EPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLFEYGISNKLAFQIQDFYKEETLEI
VEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVANELAHLIEEDKVQHVDTKIFENSLFFAEEGICNNLL
RILEKGNQNKYEPENIEAALAQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTT
VINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGDDD
TSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGALPIDFIEKKADRSYFEVRSEQIPQMI
ERIVEVAIRSGIPAQNVQVLAPMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQ
GDRVIHLVNDAESNVFNGDLGYITDLLPAKYADSKQDELTINFDGNEIVYQRSEWYKIRL
AYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVKN
TGTTRKTYLLQRFANLPTDGKTMHTSVDDLKTSVEDCVLTEENFSKINPMIGLTEEDIHS
IFGN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttacttttcaggtaccatcgaacgcattatctttgaaaatcccagcagtttt
ttccggattctgttgctaaatattgacgacaccgatgcggattttgatgattttgagatt
attgtcaccggcactatggcagatattatagagggggaagactataccttctggggaaat
ctcgtgcaacaccctaaatatggtgaacagctcaaactaatacgctatgagcgtgctaaa
ccaaccagcaaaggcttgatcaaatatttttcaagcgaccattttaaaggaatcggtgta
aaaacagcacaaaaaattgtggatctctacggcgataacacgattgataaggtcttggca
gaacccgaaaaattacatgatattgtaggcctttctgctaaaaatcgcgaagcctttatt
atgaaattaagacagaactacggtaccgagcgagtccttgcaaagctatttgagtacggc
atttcaaataaacttgcctttcagattcaagatttttacaaagaagagactctcgaaatt
gtcgaacactatccttatcaattagtggaagatattcaaggaataggatttaaaattgcc
gaccaactggcgcaaagcttaggaattgaaagtactgctccagagcgcttccgtgcagga
ttactccacacgcttctaacccagtccatggaaaaaggcgacacctatcttgaagcaaaa
gagcttctggaacacaccattgaacttctggaaagctcccgacagatcgaactagatcca
aattccgttgcaaatgagctagctcatttgattgaagaagataaagtccaacatgtcgat
acgaaaatttttgaaaacagtctcttttttgctgaagaaggaatctgcaacaatctctta
cgcattctggagaagggaaatcaaaataaatatgaaccagaaaacatcgaagctgcgctt
gctcaaatcgaagaaaaatttgctatttcttacgatgcgattcagaagcaagctatttgc
gatgctatccagcataaaattttcatcttaacaggtggtcctggaactggaaaaacgacc
gttatcaatggaattattgctgtctacgcgctgctacatggtctggatttacacaaatct
caagatttacctatccttttagctgctccaactgggcgcgctgctagacgcatgaatgaa
ttaacaggactgccaagtgcgacgattcatcggcatttaggcatgacaggagacgatgac
accagtcatttagacgattatttggacgcagattttattattgtggacgaattttcaatg
gtagatacttggttagccaatcaactactcagcaatatctcttccaatagcaagctactc
attgtcggagatgccgaccagctaccctctgtcagtcctggacaagtgttagcagatttg
ctgaaaatccccctccttccacagaccaaattagaaaaaatttatcggcagggcgaagat
tccacgatcgttaccttagctagtcagattcaaaaaggcgctctgccaattgatttcatt
gaaaaaaaagcagatcgttcttattttgaagttcgtagcgagcagattccacagatgatt
gaacgcattgtggaagtcgctatccgtagtggtattccagctcaaaatgtacaagtactt
gctcctatgtaccgtggacaagcaggaattgaccacatcaatcaactcatgcaagatctg
atcaatcctgttgtaaaagaacaactcatctttgaagctactgatggtcaataccgacaa
ggtgatcgggttattcatctcgtcaacgatgctgaaagcaatgtgttcaacggtgatttg
ggttatatcaccgatttactaccagcaaaatatgccgattccaagcaagatgaactgact
atcaatttcgacggcaatgaaattgtttatcaacgcagtgaatggtataaaattcgtctg
gcctatgccatgagcatccacaaatctcagggtagtgaatttcctgtcgtcattttacca
attacctccagcagccaccgtatgctacagcgcaatcttatctataccgccatcacccgc
gccaagagcaaattgattcttcttggggaaaagtctgcttttgcctttgctgtgaaaaat
actggcaccacccgaaaaacctatctccttcaacgttttgcaaacctaccaacagatgga
aaaacaatgcacacttctgtggatgatttgaaaacaagcgtggaagactgtgtcttgact
gaagaaaatttttcgaaaataaatcctatgatcggactgactgaagaagatatccacagt
atctttggcaactaa
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